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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-AATTAGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 3.3e-001
 0.659823 0.000910 0.247049 0.092219
 0.938242 0.000910 0.059792 0.001056
 0.014684 0.000910 0.000910 0.983496
 0.001056 0.000910 0.055465 0.942569
 0.767444 0.164795 0.000910 0.066850
 0.110343 0.000910 0.630137 0.258611
 0.001056 0.996978 0.000910 0.001056
 0.082911 0.860568 0.055465 0.001056

MOTIF 2-AGCCMAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.992249 0.002452 0.002452 0.002847
 0.002847 0.002452 0.991855 0.002847
 0.002847 0.844702 0.002452 0.149999
 0.033256 0.887987 0.002452 0.076305
 0.372515 0.622186 0.002452 0.002847
 0.918791 0.002452 0.075910 0.002847
 0.992249 0.002452 0.002452 0.002847
 0.002847 0.002452 0.991855 0.002847

MOTIF 3-CCCCGCCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.096563 0.852657 0.001581 0.049199
 0.049199 0.880413 0.021188 0.049199
 0.001835 0.994748 0.001581 0.001835
 0.001835 0.994748 0.001581 0.001835
 0.049199 0.074465 0.779620 0.096715
 0.191291 0.805293 0.001581 0.001835
 0.239113 0.662743 0.096309 0.001835
 0.049199 0.143673 0.096309 0.710819

MOTIF 4-AAGCCGRT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 6.7e-001
 0.699988 0.084625 0.000820 0.214567
 0.825495 0.123638 0.000820 0.050047
 0.000951 0.000820 0.997278 0.000951
 0.109384 0.854135 0.000820 0.035661
 0.291421 0.706808 0.000820 0.000951
 0.000951 0.133721 0.732403 0.132924
 0.308405 0.199794 0.490849 0.000951
 0.168994 0.060077 0.000820 0.770109

MOTIF 5-TAAACCTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002466 0.028472 0.002125 0.966937
 0.993284 0.002125 0.002125 0.002466
 0.929639 0.002125 0.065770 0.002466
 0.865789 0.129620 0.002125 0.002466
 0.002466 0.992943 0.002125 0.002466
 0.002466 0.992943 0.002125 0.002466
 0.129962 0.002125 0.002125 0.865789
 0.993284 0.002125 0.002125 0.002466

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ham-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ham-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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