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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-CGAACCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.003941 0.989227 0.002891 0.003941
 0.003941 0.002891 0.989227 0.003941
 0.895564 0.002891 0.097604 0.003941
 0.800851 0.002891 0.097604 0.098654
 0.003941 0.989227 0.002891 0.003941
 0.003941 0.989227 0.002891 0.003941
 0.611425 0.192317 0.097604 0.098654
 0.611425 0.097604 0.192317 0.098654

MOTIF 2-TAGGAGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.002064 0.001514 0.100878 0.895544
 0.895544 0.100878 0.001514 0.002064
 0.051666 0.100719 0.795949 0.051666
 0.200633 0.100878 0.597221 0.101268
 0.945305 0.001514 0.051117 0.002064
 0.002064 0.001514 0.845392 0.151030
 0.647532 0.001514 0.051117 0.299837
 0.002064 0.845551 0.100719 0.051666

MOTIF 3-ATTATCAK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.865216 0.066058 0.066058 0.002667
 0.002667 0.066058 0.066058 0.865216
 0.002667 0.001957 0.001957 0.993419
 0.993419 0.001957 0.001957 0.002667
 0.002667 0.001957 0.066058 0.929318
 0.002667 0.928608 0.001957 0.066768
 0.800495 0.001957 0.194881 0.002667
 0.029203 0.001957 0.643590 0.325250

MOTIF 4-AACATTTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.936647 0.001754 0.001754 0.059845
 0.848144 0.059208 0.059301 0.033347
 0.002391 0.969681 0.001754 0.026175
 0.810194 0.001754 0.174672 0.013380
 0.099025 0.001754 0.001754 0.897467
 0.117484 0.116847 0.059208 0.706461
 0.002391 0.025538 0.001754 0.970317
 0.002391 0.878372 0.116847 0.002391

MOTIF 5-ACCACGTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.935309 0.019236 0.019236 0.026218
 0.026218 0.928327 0.019236 0.026218
 0.026218 0.928327 0.019236 0.026218
 0.935309 0.019236 0.019236 0.026218
 0.026218 0.928327 0.019236 0.026218
 0.026218 0.019236 0.928327 0.026218
 0.026218 0.019236 0.019236 0.935309
 0.026218 0.019236 0.928327 0.026218

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/gei-8.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_gei-8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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