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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-ACKAWCAB STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.994736 0.001595 0.001595 0.002074
 0.002074 0.994257 0.001595 0.002074
 0.002074 0.001595 0.480975 0.515356
 0.994736 0.001595 0.001595 0.002074
 0.363265 0.001595 0.001595 0.633545
 0.210271 0.684338 0.103318 0.002074
 0.893013 0.001595 0.001595 0.103796
 0.002074 0.277038 0.413155 0.307733

MOTIF 2-AGGGAGAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.992163 0.002375 0.002375 0.003087
 0.003087 0.078091 0.840019 0.078803
 0.003087 0.002375 0.991451 0.003087
 0.078803 0.078091 0.840019 0.003087
 0.992163 0.002375 0.002375 0.003087
 0.078803 0.002375 0.901253 0.017569
 0.960820 0.002375 0.002375 0.034431
 0.384739 0.033719 0.578456 0.003087

MOTIF 3-AGCTTTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.909516 0.061499 0.001870 0.027115
 0.013836 0.001870 0.922234 0.062060
 0.062060 0.693969 0.001870 0.242101
 0.002431 0.061499 0.001870 0.934200
 0.002431 0.001870 0.001870 0.993829
 0.181317 0.001870 0.061499 0.755314
 0.062060 0.754658 0.061595 0.121688
 0.874571 0.061499 0.061499 0.002431

MOTIF 4-CCGTCCGD STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002882 0.992019 0.002217 0.002882
 0.073566 0.567688 0.214496 0.144250
 0.002882 0.002217 0.992019 0.002882
 0.073566 0.002217 0.002217 0.922000
 0.144250 0.850652 0.002217 0.002882
 0.073566 0.921335 0.002217 0.002882
 0.002882 0.002217 0.992019 0.002882
 0.285618 0.072901 0.285180 0.356302

MOTIF 5-AAATGCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.992709 0.002209 0.002209 0.002872
 0.992709 0.002209 0.002209 0.002872
 0.992709 0.002209 0.002209 0.002872
 0.214436 0.002209 0.072655 0.710700
 0.002872 0.002209 0.992046 0.002872
 0.032034 0.680649 0.284445 0.002872
 0.073318 0.002209 0.851155 0.073318
 0.143990 0.821766 0.002209 0.032034

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/gei-17.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_gei-17/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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