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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.305 C 0.195 G 0.195 T 0.305 

MOTIF 1-AAAAGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.909497 0.002314 0.084570 0.003619
 0.991752 0.002314 0.002314 0.003619
 0.909497 0.084570 0.002314 0.003619
 0.909497 0.002314 0.002314 0.085875
 0.003619 0.167358 0.660358 0.168664
 0.085875 0.002314 0.002314 0.909497
 0.085875 0.002314 0.908192 0.003619
 0.827241 0.084570 0.002314 0.085875

MOTIF 2-AAAATACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.770481 0.112355 0.112355 0.004809
 0.879762 0.003074 0.003074 0.114089
 0.989043 0.003074 0.003074 0.004809
 0.769773 0.222344 0.003074 0.004809
 0.004809 0.003074 0.003074 0.989043
 0.879762 0.003074 0.112355 0.004809
 0.004809 0.987308 0.003074 0.004809
 0.770481 0.112355 0.112355 0.004809

MOTIF 3-AACAAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.891677 0.101222 0.002770 0.004332
 0.891677 0.002770 0.002770 0.102784
 0.004332 0.890114 0.002770 0.102784
 0.891677 0.101222 0.002770 0.004332
 0.990128 0.002770 0.002770 0.004332
 0.990128 0.002770 0.002770 0.004332
 0.004332 0.692572 0.101222 0.201874
 0.891677 0.002770 0.101222 0.004332

MOTIF 4-TCACCAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.004006 0.002561 0.002561 0.990871
 0.095056 0.807326 0.002561 0.095056
 0.899821 0.093611 0.002561 0.004006
 0.004006 0.989426 0.002561 0.004006
 0.186696 0.624636 0.093611 0.095056
 0.808771 0.002561 0.002561 0.186106
 0.041599 0.185251 0.769143 0.004006
 0.808771 0.093611 0.002561 0.095056

MOTIF 5-GAAMKTTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.002632 0.048032 0.772445 0.176890
 0.994002 0.001683 0.001683 0.002632
 0.622519 0.133873 0.061506 0.182102
 0.557016 0.432989 0.001683 0.008312
 0.008312 0.001683 0.432989 0.557016
 0.182102 0.061506 0.133873 0.622519
 0.002632 0.001683 0.001683 0.994002
 0.176890 0.772445 0.048032 0.002632

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/fos-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_fos-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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