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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.238 C 0.262 G 0.262 T 0.238 

MOTIF 1-GGGTTCGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.2e-001
 0.078832 0.001459 0.918386 0.001323
 0.039953 0.001459 0.957265 0.001323
 0.001323 0.040027 0.957327 0.001323
 0.078583 0.001459 0.117535 0.802424
 0.001323 0.001459 0.001459 0.995759
 0.001323 0.957327 0.001459 0.039891
 0.195411 0.001459 0.801807 0.001323
 0.979793 0.001459 0.001459 0.017289

MOTIF 2-GTGGTCTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.002602 0.002869 0.991926 0.002602
 0.002602 0.002869 0.002869 0.991659
 0.002602 0.002869 0.991926 0.002602
 0.002602 0.078725 0.916071 0.002602
 0.002602 0.231169 0.002869 0.763359
 0.002602 0.763626 0.231169 0.002602
 0.002602 0.002869 0.078725 0.915804
 0.915804 0.002869 0.002869 0.078458

MOTIF 3-GARCGCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.002485 0.016597 0.905986 0.074931
 0.919588 0.002740 0.002740 0.074931
 0.627458 0.002740 0.367316 0.002485
 0.002485 0.816548 0.002740 0.178226
 0.002485 0.002740 0.992289 0.002485
 0.002485 0.992289 0.002740 0.002485
 0.002485 0.002740 0.220779 0.773996
 0.002485 0.992289 0.002740 0.002485

MOTIF 4-AAAAGATT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.989177 0.003723 0.003723 0.003377
 0.792018 0.003723 0.200883 0.003377
 0.692961 0.003723 0.299940 0.003377
 0.890756 0.003723 0.102145 0.003377
 0.003377 0.003723 0.989524 0.003377
 0.989177 0.003723 0.003723 0.003377
 0.003377 0.003723 0.003723 0.989177
 0.101798 0.003723 0.102145 0.792334

MOTIF 5-AGCATGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.930709 0.023836 0.023836 0.021618
 0.021618 0.023836 0.932927 0.021618
 0.021618 0.932927 0.023836 0.021618
 0.930709 0.023836 0.023836 0.021618
 0.021618 0.023836 0.023836 0.930709
 0.021618 0.023836 0.932927 0.021618
 0.021618 0.023836 0.932927 0.021618
 0.021618 0.023836 0.932927 0.021618

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/flh-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_flh-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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