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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.3 C 0.2 G 0.2 T 0.3 

MOTIF 1-SGTTGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 5.0e-001
 0.120741 0.563441 0.281749 0.034068
 0.001012 0.000675 0.940866 0.057447
 0.094527 0.000675 0.000675 0.904123
 0.080826 0.000675 0.000675 0.917824
 0.047844 0.000675 0.805118 0.146362
 0.001012 0.814219 0.000675 0.184094
 0.104205 0.737893 0.000675 0.157227
 0.847688 0.000675 0.000675 0.150962

MOTIF 2-TCMYRKGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.0e-001
 0.101340 0.000778 0.087412 0.810469
 0.028131 0.869924 0.033324 0.068621
 0.545583 0.379437 0.073814 0.001167
 0.098890 0.550442 0.000778 0.349890
 0.349890 0.000778 0.550442 0.098890
 0.001167 0.073814 0.379437 0.545583
 0.068621 0.033324 0.869924 0.028131
 0.810469 0.087412 0.000778 0.101340

MOTIF 3-CGCCGGWA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.201421 0.692891 0.101424 0.004265
 0.004265 0.002846 0.890046 0.102843
 0.102843 0.890046 0.002846 0.004265
 0.102843 0.890046 0.002846 0.004265
 0.004265 0.002846 0.890046 0.102843
 0.102843 0.002846 0.890046 0.004265
 0.595732 0.101424 0.002846 0.299999
 0.891466 0.002846 0.002846 0.102843

MOTIF 4-AGAATGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.936355 0.018191 0.018191 0.027264
 0.027264 0.018191 0.927282 0.027264
 0.936355 0.018191 0.018191 0.027264
 0.936355 0.018191 0.018191 0.027264
 0.027264 0.018191 0.018191 0.936355
 0.027264 0.018191 0.927282 0.027264
 0.027264 0.018191 0.018191 0.936355
 0.936355 0.018191 0.018191 0.027264

MOTIF 5-TAAGAATT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.0e+000
 0.001079 0.011047 0.011047 0.976827
 0.737043 0.100783 0.061233 0.100941
 0.887373 0.025665 0.035992 0.050970
 0.051050 0.075636 0.687050 0.186264
 0.852061 0.011047 0.011047 0.125846
 0.826995 0.096289 0.025665 0.051050
 0.086242 0.075556 0.075556 0.762646
 0.150992 0.075556 0.000720 0.772732

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/fkh-8.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_fkh-8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	2.26 seconds
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