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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-AGGGTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.930918 0.023627 0.023627 0.021827
 0.021827 0.023627 0.932718 0.021827
 0.021827 0.023627 0.932718 0.021827
 0.021827 0.023627 0.932718 0.021827
 0.021827 0.023627 0.023627 0.930918
 0.021827 0.023627 0.932718 0.021827
 0.930918 0.023627 0.023627 0.021827
 0.021827 0.932718 0.023627 0.021827

MOTIF 2-AATGGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.889699 0.002715 0.105079 0.002508
 0.817070 0.032684 0.147738 0.002508
 0.074903 0.002715 0.032684 0.889699
 0.002508 0.002715 0.919875 0.074903
 0.002508 0.075110 0.847479 0.074903
 0.002508 0.002715 0.817510 0.177268
 0.002508 0.889905 0.032684 0.074903
 0.002508 0.002715 0.992270 0.002508

MOTIF 3-CTCGGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.022929 0.901113 0.053029 0.022929
 0.027327 0.053029 0.063911 0.855734
 0.310099 0.686214 0.001916 0.001770
 0.052883 0.053029 0.871160 0.022929
 0.001770 0.001916 0.994543 0.001770
 0.052883 0.943430 0.001916 0.001770
 0.052883 0.892318 0.001916 0.052883
 0.973238 0.001916 0.023075 0.001770

MOTIF 4-CCACAGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.115860 0.823184 0.058986 0.001969
 0.001969 0.880038 0.116023 0.001969
 0.936913 0.002132 0.058986 0.001969
 0.058915 0.823093 0.116023 0.001969
 0.709314 0.058986 0.058986 0.172715
 0.001969 0.002132 0.993929 0.001969
 0.993767 0.002132 0.002132 0.001969
 0.058823 0.002132 0.913540 0.025505

MOTIF 5-AAGAAGGV STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.740088 0.003131 0.003131 0.253651
 0.990846 0.003131 0.003131 0.002892
 0.002892 0.003131 0.991085 0.002892
 0.671942 0.003131 0.322035 0.002892
 0.990846 0.003131 0.003131 0.002892
 0.002892 0.003131 0.991085 0.002892
 0.002892 0.003131 0.991085 0.002892
 0.238300 0.421422 0.337386 0.002892

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/fkh-6.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_fkh-6/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.94 seconds
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