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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-CAKATGTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 4.9e-002
 0.000713 0.981797 0.000464 0.017026
 0.916795 0.016777 0.065715 0.000713
 0.000713 0.138541 0.334475 0.526271
 0.663208 0.219124 0.116955 0.000713
 0.000713 0.000464 0.000464 0.998360
 0.000713 0.000464 0.998110 0.000713
 0.000713 0.154640 0.186042 0.658604
 0.000713 0.000464 0.000464 0.998360

MOTIF 2-CAATAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.027545 0.927000 0.017909 0.027545
 0.936636 0.017909 0.017909 0.027545
 0.936636 0.017909 0.017909 0.027545
 0.027545 0.017909 0.017909 0.936636
 0.936636 0.017909 0.017909 0.027545
 0.936636 0.017909 0.017909 0.027545
 0.936636 0.017909 0.017909 0.027545
 0.027545 0.017909 0.017909 0.936636

MOTIF 3-TATTACAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.183463 0.002547 0.002547 0.811442
 0.901359 0.002547 0.002547 0.093547
 0.003918 0.092176 0.002547 0.901359
 0.003918 0.002547 0.002547 0.990987
 0.990987 0.002547 0.002547 0.003918
 0.003918 0.899988 0.092176 0.003918
 0.811730 0.002547 0.002547 0.183175
 0.093547 0.810360 0.092176 0.003918

MOTIF 4-AAGGAGGW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.742388 0.126126 0.003486 0.128001
 0.987668 0.003486 0.003486 0.005361
 0.005361 0.003486 0.985792 0.005361
 0.005361 0.003486 0.863152 0.128001
 0.987668 0.003486 0.003486 0.005361
 0.005361 0.003486 0.985792 0.005361
 0.005361 0.003486 0.863152 0.128001
 0.618561 0.003486 0.003486 0.374467

MOTIF 5-TAAGAATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.033712 0.075753 0.002093 0.888441
 0.845037 0.002093 0.149649 0.003220
 0.918934 0.075753 0.002093 0.003220
 0.225269 0.002093 0.695758 0.076879
 0.845274 0.075753 0.002093 0.076879
 0.845274 0.002093 0.002093 0.150539
 0.003220 0.002093 0.075753 0.918934
 0.918934 0.075753 0.002093 0.003220

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/fkh-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_fkh-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.20 seconds
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