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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-CTAGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.7e-001
 0.023545 0.931000 0.021909 0.023545
 0.023545 0.021909 0.021909 0.932636
 0.932636 0.021909 0.021909 0.023545
 0.023545 0.021909 0.931000 0.023545
 0.023545 0.021909 0.931000 0.023545
 0.023545 0.931000 0.021909 0.023545
 0.023545 0.931000 0.021909 0.023545
 0.932636 0.021909 0.021909 0.023545

MOTIF 2-CAAATGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.003021 0.910288 0.002811 0.083879
 0.991356 0.002811 0.002811 0.003021
 0.991356 0.002811 0.002811 0.003021
 0.829381 0.164787 0.002811 0.003021
 0.003021 0.262647 0.002811 0.731520
 0.164997 0.002811 0.829171 0.003021
 0.003021 0.829431 0.083669 0.083879
 0.003021 0.002811 0.991146 0.003021

MOTIF 3-ACGAAAAS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.990421 0.003115 0.003115 0.003348
 0.003348 0.900587 0.003115 0.092949
 0.003348 0.003115 0.990189 0.003348
 0.990421 0.003115 0.003115 0.003348
 0.900820 0.092717 0.003115 0.003348
 0.900820 0.092717 0.003115 0.003348
 0.990421 0.003115 0.003115 0.003348
 0.003348 0.541590 0.451714 0.003348

MOTIF 4-AGTACACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.932636 0.021909 0.021909 0.023545
 0.023545 0.021909 0.931000 0.023545
 0.023545 0.021909 0.021909 0.932636
 0.932636 0.021909 0.021909 0.023545
 0.023545 0.931000 0.021909 0.023545
 0.932636 0.021909 0.021909 0.023545
 0.023545 0.931000 0.021909 0.023545
 0.023545 0.021909 0.931000 0.023545

MOTIF 5-AACTTGTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.911858 0.082398 0.002769 0.002975
 0.752600 0.082398 0.082398 0.082604
 0.035939 0.878688 0.002769 0.082604
 0.002975 0.002769 0.002769 0.991487
 0.162233 0.082398 0.002769 0.752600
 0.002975 0.002769 0.991281 0.002975
 0.002975 0.002769 0.082398 0.911858
 0.082604 0.752394 0.082398 0.082604

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/fax-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_fax-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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