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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-TTGCAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 4.9e-002
 0.000648 0.210642 0.000704 0.788007
 0.000648 0.019436 0.139644 0.840273
 0.139648 0.053677 0.753054 0.053621
 0.005694 0.910272 0.045923 0.038112
 0.857088 0.102300 0.039965 0.000648
 0.802869 0.019436 0.000704 0.176991
 0.690084 0.094425 0.056930 0.158561
 0.549142 0.224600 0.131889 0.094369

MOTIF 2-TCGAACTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.003336 0.003626 0.003626 0.989412
 0.099852 0.893186 0.003626 0.003336
 0.003336 0.196968 0.796359 0.003336
 0.892896 0.003626 0.100142 0.003336
 0.989412 0.003626 0.003626 0.003336
 0.003336 0.893186 0.100142 0.003336
 0.003336 0.313780 0.003626 0.679258
 0.099852 0.893186 0.003626 0.003336

MOTIF 3-AATGGGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.920718 0.074128 0.002684 0.002470
 0.849044 0.002684 0.145802 0.002470
 0.002470 0.002684 0.002684 0.992162
 0.002470 0.074128 0.849488 0.073914
 0.145588 0.002684 0.849258 0.002470
 0.002470 0.002684 0.992377 0.002470
 0.032045 0.789490 0.175995 0.002470
 0.145588 0.002684 0.849258 0.002470

MOTIF 4-CGACGCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.085122 0.908943 0.003091 0.002844
 0.167665 0.003091 0.744122 0.085122
 0.826418 0.085369 0.003091 0.085122
 0.002844 0.991221 0.003091 0.002844
 0.002844 0.167912 0.744122 0.085122
 0.085122 0.744122 0.003091 0.167665
 0.002844 0.003091 0.167912 0.826153
 0.002844 0.991221 0.003091 0.002844

MOTIF 5-CTTCCCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003098 0.990438 0.003367 0.003098
 0.003098 0.092982 0.003367 0.900553
 0.003098 0.092982 0.003367 0.900553
 0.003098 0.990438 0.003367 0.003098
 0.092713 0.721447 0.092982 0.092858
 0.003098 0.990438 0.003367 0.003098
 0.900553 0.003367 0.003367 0.092713
 0.003098 0.810918 0.003367 0.182617

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/eyg-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_eyg-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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