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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-AAGCGAGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.920855 0.073987 0.002482 0.002676
 0.920855 0.002482 0.073987 0.002676
 0.074181 0.002482 0.920661 0.002676
 0.074181 0.747821 0.032083 0.145915
 0.074181 0.002482 0.920661 0.002676
 0.962759 0.002482 0.002482 0.032277
 0.002676 0.073987 0.920661 0.002676
 0.217882 0.073987 0.002482 0.705650

MOTIF 2-CCGGAAGD STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 7.6e-001
 0.154950 0.842045 0.001446 0.001559
 0.001559 0.995436 0.001446 0.001559
 0.001559 0.001446 0.995436 0.001559
 0.001559 0.001446 0.995436 0.001559
 0.995549 0.001446 0.001446 0.001559
 0.995549 0.001446 0.001446 0.001559
 0.001559 0.001446 0.995436 0.001559
 0.197013 0.168490 0.252756 0.381741

MOTIF 3-AATGGGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 7.6e-001
 0.985051 0.004856 0.004856 0.005236
 0.845142 0.004856 0.004856 0.145145
 0.005236 0.004856 0.004856 0.985051
 0.005236 0.004856 0.844762 0.145145
 0.005236 0.004856 0.984672 0.005236
 0.005236 0.004856 0.844762 0.145145
 0.145145 0.004856 0.844762 0.005236
 0.145145 0.844762 0.004856 0.005236

MOTIF 4-CCTTKTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001583 0.953071 0.001468 0.043878
 0.086174 0.826184 0.086059 0.001583
 0.001583 0.001468 0.001468 0.995481
 0.001583 0.272750 0.001468 0.724199
 0.001583 0.043764 0.611660 0.342994
 0.001583 0.001468 0.001468 0.995481
 0.001583 0.910775 0.001468 0.086174
 0.043878 0.136581 0.733367 0.086174

MOTIF 5-ACKCGGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.988340 0.003788 0.003788 0.004084
 0.004084 0.988044 0.003788 0.004084
 0.004084 0.003788 0.659607 0.332521
 0.113211 0.878917 0.003788 0.004084
 0.004084 0.003788 0.878917 0.113211
 0.113211 0.003788 0.878917 0.004084
 0.004084 0.988044 0.003788 0.004084
 0.004084 0.988044 0.003788 0.004084

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ets-7.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ets-7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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