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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.258 C 0.242 G 0.242 T 0.258 

MOTIF 1-CTAGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 1.7e-001
 0.026028 0.921894 0.000876 0.051202
 0.026028 0.000876 0.000876 0.972221
 0.666859 0.331331 0.000876 0.000934
 0.000934 0.000876 0.997256 0.000934
 0.000934 0.000876 0.809157 0.189033
 0.000934 0.997256 0.000876 0.000934
 0.000934 0.997256 0.000876 0.000934
 0.811874 0.000876 0.186316 0.000934

MOTIF 2-AGAGACGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.747582 0.001724 0.051118 0.199576
 0.001839 0.051118 0.945203 0.001839
 0.895924 0.100513 0.001724 0.001839
 0.001839 0.001724 0.895650 0.100787
 0.994713 0.001724 0.001724 0.001839
 0.100787 0.747308 0.001724 0.150181
 0.001839 0.001724 0.994598 0.001839
 0.001839 0.994598 0.001724 0.001839

MOTIF 3-RRARTACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.560959 0.002141 0.434615 0.002285
 0.371009 0.063496 0.460014 0.105481
 0.932078 0.063496 0.002141 0.002285
 0.535560 0.002141 0.460014 0.002285
 0.002285 0.002141 0.002141 0.993433
 0.993433 0.002141 0.002141 0.002285
 0.002285 0.993290 0.002141 0.002285
 0.993433 0.002141 0.002141 0.002285

MOTIF 4-CACACTGK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003658 0.989256 0.003428 0.003658
 0.891253 0.003428 0.003428 0.101891
 0.003658 0.891023 0.101661 0.003658
 0.989486 0.003428 0.003428 0.003658
 0.101891 0.891023 0.003428 0.003658
 0.003658 0.003428 0.003428 0.989486
 0.003658 0.003428 0.989256 0.003658
 0.003658 0.003428 0.494910 0.498004

MOTIF 5-AGCATCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.993763 0.002034 0.002034 0.002170
 0.002170 0.002034 0.993627 0.002170
 0.002170 0.877079 0.118581 0.002170
 0.935489 0.002034 0.002034 0.060444
 0.177085 0.002034 0.176949 0.643933
 0.118905 0.701976 0.002034 0.177085
 0.760104 0.002034 0.235692 0.002170
 0.526915 0.118581 0.176949 0.177555

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ets-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ets-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n05.farnam.hpc.yale.internal
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FINALTIME:	1.39 seconds
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