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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.318 C 0.182 G 0.182 T 0.318 

MOTIF 1-GAGACGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.002737 0.001567 0.992959 0.002737
 0.969431 0.001567 0.001567 0.027436
 0.002737 0.001567 0.968260 0.027436
 0.994130 0.001567 0.001567 0.002737
 0.002737 0.992959 0.001567 0.002737
 0.002737 0.121086 0.873439 0.002737
 0.002737 0.873246 0.001567 0.122450
 0.994130 0.001567 0.001567 0.002737

MOTIF 2-ATAATCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.937862 0.001485 0.058057 0.002595
 0.002595 0.001485 0.001485 0.994434
 0.891025 0.058057 0.024904 0.026014
 0.842712 0.001485 0.058057 0.097746
 0.172857 0.058057 0.058057 0.711029
 0.002595 0.823062 0.001485 0.172857
 0.937862 0.001485 0.001485 0.059167
 0.937862 0.001485 0.001485 0.059167

MOTIF 3-ATTTACAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.819394 0.001529 0.176406 0.002671
 0.002671 0.001529 0.001529 0.994271
 0.119319 0.001529 0.059759 0.819394
 0.119131 0.001529 0.001529 0.877811
 0.701992 0.293807 0.001529 0.002671
 0.002671 0.993128 0.001529 0.002671
 0.702934 0.059759 0.001529 0.235778
 0.877811 0.001529 0.059759 0.060901

MOTIF 4-AGTTATCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.8e-001
 0.901524 0.002354 0.002354 0.093768
 0.004113 0.002354 0.989420 0.004113
 0.183711 0.002354 0.092009 0.721927
 0.004113 0.002354 0.092009 0.901524
 0.991179 0.002354 0.002354 0.004113
 0.004113 0.002354 0.002354 0.991179
 0.004113 0.720168 0.092009 0.183711
 0.901524 0.092009 0.002354 0.004113

MOTIF 5-ATTTTTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.938000 0.016545 0.016545 0.028909
 0.028909 0.016545 0.016545 0.938000
 0.028909 0.016545 0.016545 0.938000
 0.028909 0.016545 0.016545 0.938000
 0.028909 0.016545 0.016545 0.938000
 0.028909 0.016545 0.016545 0.938000
 0.028909 0.016545 0.925636 0.028909
 0.028909 0.925636 0.016545 0.028909

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/eor-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_eor-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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