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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.315 C 0.185 G 0.185 T 0.315 

MOTIF 1-CTTATCAM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 2.1e-001
 0.001867 0.995168 0.001097 0.001867
 0.001867 0.001097 0.124522 0.872514
 0.001867 0.001097 0.001097 0.995938
 0.913611 0.001097 0.083424 0.001867
 0.001867 0.001097 0.001097 0.995938
 0.001867 0.995168 0.001097 0.001867
 0.995938 0.001097 0.001097 0.001867
 0.371852 0.459997 0.166284 0.001867

MOTIF 2-TCGAAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.263406 0.001393 0.001393 0.733808
 0.054544 0.784667 0.001393 0.159395
 0.106885 0.053567 0.837178 0.002370
 0.786149 0.053567 0.105740 0.054544
 0.942670 0.053567 0.001393 0.002370
 0.994843 0.001393 0.001393 0.002370
 0.002370 0.001393 0.053567 0.942670
 0.002370 0.105908 0.889351 0.002370

MOTIF 3-AAAGAAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 7.6e-001
 0.770527 0.002915 0.002915 0.223642
 0.770527 0.002915 0.002915 0.223642
 0.880044 0.112081 0.002915 0.004959
 0.004959 0.002915 0.987166 0.004959
 0.880044 0.002915 0.002915 0.114125
 0.989210 0.002915 0.002915 0.004959
 0.004959 0.002915 0.987166 0.004959
 0.989210 0.002915 0.002915 0.004959

MOTIF 4-AGTTTTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.992484 0.002031 0.002031 0.003455
 0.079496 0.002031 0.762691 0.155782
 0.079496 0.154114 0.002031 0.764359
 0.003455 0.002031 0.078072 0.916443
 0.003455 0.002031 0.002031 0.992484
 0.003455 0.002031 0.002031 0.992484
 0.003455 0.915019 0.002031 0.079496
 0.155538 0.610608 0.078072 0.155782

MOTIF 5-GATTGATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.028627 0.016827 0.925918 0.028627
 0.937718 0.016827 0.016827 0.028627
 0.028627 0.016827 0.016827 0.937718
 0.028627 0.016827 0.016827 0.937718
 0.028627 0.016827 0.925918 0.028627
 0.937718 0.016827 0.016827 0.028627
 0.028627 0.016827 0.016827 0.937718
 0.937718 0.016827 0.016827 0.028627

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/elt-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_elt-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	0.95 seconds
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