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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.316 C 0.184 G 0.184 T 0.316 

MOTIF 1-YCTTATCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 84 P= 8.5e-002
 0.031099 0.345022 0.171892 0.451988
 0.018822 0.886566 0.018480 0.076132
 0.000820 0.018480 0.000478 0.980221
 0.000820 0.000478 0.000478 0.998223
 0.996570 0.000478 0.000478 0.002473
 0.000820 0.000478 0.000478 0.998223
 0.000820 0.961877 0.018480 0.018822
 0.972769 0.000478 0.018480 0.008272

MOTIF 2-AACTGATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 1.7e-001
 0.756811 0.160605 0.080768 0.001816
 0.774946 0.001059 0.222179 0.001816
 0.001816 0.755797 0.001059 0.241328
 0.086359 0.001059 0.001059 0.911523
 0.041670 0.001059 0.955455 0.001816
 0.876503 0.120622 0.001059 0.001816
 0.001816 0.040914 0.001059 0.956212
 0.996066 0.001059 0.001059 0.001816

MOTIF 3-AGAATTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.901524 0.002382 0.002382 0.093712
 0.004084 0.002382 0.899823 0.093712
 0.901524 0.002382 0.002382 0.093712
 0.991153 0.002382 0.002382 0.004084
 0.273836 0.092010 0.002382 0.631772
 0.004084 0.002382 0.002382 0.991153
 0.811607 0.002382 0.181927 0.004084
 0.004084 0.899823 0.092010 0.004084

MOTIF 4-GCCAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004981 0.002905 0.987134 0.004981
 0.004981 0.987134 0.002905 0.004981
 0.004981 0.768494 0.112225 0.114300
 0.770570 0.002905 0.112225 0.114300
 0.004981 0.002905 0.987134 0.004981
 0.989209 0.002905 0.002905 0.004981
 0.770570 0.002905 0.112225 0.114300
 0.879889 0.112225 0.002905 0.004981

MOTIF 5-AAATTCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.937800 0.016745 0.016745 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.937800 0.016745 0.016745 0.028709
 0.028709 0.016745 0.016745 0.937800
 0.028709 0.016745 0.016745 0.937800
 0.028709 0.925836 0.016745 0.028709
 0.028709 0.925836 0.016745 0.028709
 0.028709 0.016745 0.925836 0.028709

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/elt-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_elt-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c26n02.farnam.hpc.yale.internal
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FINALTIME:	1.08 seconds
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