********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-ATCAAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.7e-001
 0.937545 0.017000 0.017000 0.028455
 0.028455 0.017000 0.017000 0.937545
 0.028455 0.926091 0.017000 0.028455
 0.937545 0.017000 0.017000 0.028455
 0.937545 0.017000 0.017000 0.028455
 0.937545 0.017000 0.017000 0.028455
 0.937545 0.017000 0.017000 0.028455
 0.028455 0.017000 0.017000 0.937545

MOTIF 2-ATGTTATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.913357 0.019826 0.019826 0.046992
 0.010630 0.046175 0.001213 0.941982
 0.002030 0.001213 0.722768 0.273989
 0.002030 0.091281 0.091281 0.815408
 0.002030 0.001213 0.001213 0.995544
 0.860514 0.001213 0.046175 0.092098
 0.002030 0.001213 0.001213 0.995544
 0.002030 0.904803 0.046175 0.046992

MOTIF 3-AGATAAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.0e-001
 0.848425 0.079616 0.014363 0.057596
 0.034045 0.000879 0.963606 0.001471
 0.833903 0.066026 0.066026 0.034045
 0.021190 0.033505 0.000879 0.944426
 0.806746 0.038291 0.055666 0.099297
 0.833850 0.033453 0.066026 0.066671
 0.071628 0.009654 0.917247 0.001471
 0.667518 0.164063 0.003870 0.164549

MOTIF 4-GATTGAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 7.5e-001
 0.073288 0.000967 0.780672 0.145073
 0.730769 0.108472 0.072637 0.088123
 0.123958 0.108472 0.000967 0.766604
 0.088123 0.036802 0.051636 0.823439
 0.073403 0.000967 0.909177 0.016453
 0.802324 0.144422 0.036802 0.016453
 0.823439 0.087471 0.015801 0.073288
 0.061891 0.072752 0.827904 0.037453

MOTIF 5-ATCTCAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.946944 0.049574 0.001302 0.002180
 0.070434 0.001302 0.049574 0.878690
 0.002180 0.946067 0.001302 0.050451
 0.002180 0.001302 0.001302 0.995216
 0.050451 0.849369 0.098000 0.002180
 0.801664 0.146583 0.001302 0.050451
 0.878118 0.001302 0.001302 0.119277
 0.050451 0.768179 0.082492 0.098878

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/elt-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_elt-1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n07.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.02 seconds
********************************************************************************