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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-AGACGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.905394 0.002629 0.088418 0.003560
 0.003560 0.002629 0.990252 0.003560
 0.819604 0.002629 0.088418 0.089349
 0.089349 0.732884 0.088418 0.089349
 0.003560 0.088418 0.904463 0.003560
 0.003560 0.904463 0.002629 0.089349
 0.991183 0.002629 0.002629 0.003560
 0.003560 0.002629 0.990252 0.003560

MOTIF 2-CTGATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.155741 0.656088 0.186576 0.001595
 0.001595 0.039622 0.001178 0.957605
 0.001595 0.001178 0.995632 0.001595
 0.765140 0.116633 0.116633 0.001595
 0.001595 0.001178 0.001178 0.996049
 0.842274 0.001178 0.078065 0.078482
 0.688376 0.231963 0.039622 0.040039
 0.001595 0.231963 0.726403 0.040039

MOTIF 3-AAAAGGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.946526 0.001486 0.049976 0.002012
 0.751939 0.147426 0.001486 0.099149
 0.800586 0.098780 0.098623 0.002012
 0.917178 0.021559 0.010761 0.050502
 0.002012 0.098623 0.897353 0.002012
 0.002012 0.021559 0.925926 0.050502
 0.974943 0.001486 0.001486 0.022085
 0.946526 0.049976 0.001486 0.002012

MOTIF 4-GRGAAACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004843 0.120291 0.870024 0.004843
 0.356115 0.003576 0.635465 0.004843
 0.004843 0.120291 0.870024 0.004843
 0.871290 0.003576 0.003576 0.121557
 0.988004 0.003576 0.003576 0.004843
 0.988004 0.003576 0.003576 0.004843
 0.053159 0.821708 0.003576 0.121557
 0.004843 0.003576 0.986738 0.004843

MOTIF 5-ATCGTTCK STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.884664 0.003205 0.003205 0.108926
 0.004339 0.003205 0.003205 0.989251
 0.004339 0.778943 0.107791 0.108926
 0.004339 0.003205 0.988116 0.004339
 0.004339 0.003205 0.003205 0.989251
 0.108926 0.003205 0.046500 0.841369
 0.004339 0.883530 0.003205 0.108926
 0.108926 0.003205 0.569433 0.318436

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/egl-27.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_egl-27/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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