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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-RRTGGAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 77 P= 1.2e-002
 0.486424 0.026854 0.467445 0.019277
 0.570876 0.112011 0.316392 0.000721
 0.037832 0.231235 0.000617 0.730315
 0.290435 0.000617 0.708226 0.000721
 0.000721 0.000617 0.997940 0.000721
 0.827435 0.000617 0.171227 0.000721
 0.000721 0.000617 0.979385 0.019277
 0.000721 0.800914 0.134295 0.064069

MOTIF 2-GCAAACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.001575 0.001348 0.832586 0.164490
 0.001575 0.914306 0.001348 0.082770
 0.955196 0.041881 0.001348 0.001575
 0.914533 0.001348 0.001348 0.082770
 0.938417 0.041881 0.018127 0.001575
 0.001575 0.832980 0.041881 0.123564
 0.995728 0.001348 0.001348 0.001575
 0.001575 0.873512 0.001348 0.123564

MOTIF 3-CRCTTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.001542 0.916265 0.001320 0.080874
 0.399034 0.040986 0.558439 0.001542
 0.041208 0.717552 0.001320 0.239921
 0.001542 0.040986 0.001320 0.956153
 0.041208 0.001320 0.001320 0.956153
 0.041208 0.001320 0.955931 0.001542
 0.001542 0.955867 0.001320 0.041271
 0.757696 0.001320 0.001320 0.239665

MOTIF 4-AATTTGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.709020 0.008901 0.120623 0.161456
 0.974463 0.001319 0.022677 0.001541
 0.001541 0.040959 0.040959 0.916541
 0.017950 0.040959 0.040959 0.900131
 0.001541 0.069620 0.001319 0.927520
 0.161456 0.001319 0.835685 0.001541
 0.995822 0.001319 0.001319 0.001541
 0.916413 0.001319 0.001319 0.080949

MOTIF 5-CCCGCCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 7.0e-001
 0.130278 0.622996 0.173188 0.073538
 0.001661 0.995256 0.001422 0.001661
 0.001661 0.995256 0.001422 0.001661
 0.001661 0.001422 0.952522 0.044395
 0.044395 0.952522 0.001422 0.001661
 0.001661 0.952522 0.044156 0.001661
 0.866879 0.001422 0.130038 0.001661
 0.952761 0.001422 0.001422 0.044395

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/efl-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_efl-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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