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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-ABTGATAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 3.0e-001
 0.766669 0.000818 0.231140 0.001373
 0.001373 0.404272 0.208931 0.385423
 0.183813 0.000818 0.000818 0.814550
 0.001373 0.000818 0.996436 0.001373
 0.996991 0.000818 0.000818 0.001373
 0.001373 0.000818 0.000818 0.996991
 0.936145 0.061664 0.000818 0.001373
 0.996991 0.000818 0.000818 0.001373

MOTIF 2-AAAAGTGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.828774 0.001122 0.126546 0.043557
 0.870448 0.001122 0.126546 0.001884
 0.954198 0.001122 0.001122 0.043557
 0.811523 0.018374 0.126546 0.043557
 0.211601 0.001122 0.659969 0.127307
 0.043557 0.001122 0.018374 0.936946
 0.001884 0.001122 0.977859 0.019135
 0.085365 0.084604 0.786340 0.043692

MOTIF 3-CTATCAGY STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004934 0.987191 0.002940 0.004934
 0.004934 0.002940 0.002940 0.989185
 0.989185 0.002940 0.002940 0.004934
 0.114100 0.002940 0.002940 0.880019
 0.004934 0.878025 0.002940 0.114100
 0.989185 0.002940 0.002940 0.004934
 0.004934 0.002940 0.768508 0.223617
 0.004934 0.658638 0.002940 0.333488

MOTIF 4-CAAAAAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.028482 0.926064 0.016973 0.028482
 0.937573 0.016973 0.016973 0.028482
 0.937573 0.016973 0.016973 0.028482
 0.937573 0.016973 0.016973 0.028482
 0.937573 0.016973 0.016973 0.028482
 0.937573 0.016973 0.016973 0.028482
 0.937573 0.016973 0.016973 0.028482
 0.028482 0.016973 0.926064 0.028482

MOTIF 5-TAAGGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.068943 0.133912 0.133912 0.663234
 0.861542 0.067738 0.001777 0.068943
 0.927504 0.001777 0.001777 0.068943
 0.002981 0.001777 0.992260 0.002981
 0.002981 0.001777 0.926299 0.068943
 0.927504 0.067738 0.001777 0.002981
 0.927504 0.067738 0.001777 0.002981
 0.794943 0.001777 0.001777 0.201504

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/dve-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_dve-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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