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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-ACTTGACT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.991520 0.002543 0.002543 0.003393
 0.003393 0.908370 0.002543 0.085693
 0.003393 0.002543 0.084843 0.909220
 0.167993 0.002543 0.002543 0.826921
 0.085693 0.084843 0.826070 0.003393
 0.909220 0.002543 0.084843 0.003393
 0.003393 0.908370 0.002543 0.085693
 0.250557 0.084843 0.084843 0.579756

MOTIF 2-TAATAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002747 0.002058 0.269793 0.725402
 0.832340 0.068669 0.029633 0.069357
 0.926419 0.002058 0.002058 0.069464
 0.002747 0.002058 0.002058 0.993137
 0.859915 0.068669 0.002058 0.069357
 0.926526 0.002058 0.068669 0.002747
 0.993137 0.002058 0.002058 0.002747
 0.965562 0.002058 0.002058 0.030321

MOTIF 3-ATGATGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.993939 0.001818 0.001818 0.002425
 0.179452 0.001818 0.178465 0.640265
 0.061245 0.001818 0.934512 0.002425
 0.993939 0.001818 0.001818 0.002425
 0.002425 0.060637 0.119646 0.817292
 0.179073 0.001818 0.816684 0.002425
 0.910771 0.001818 0.060637 0.026775
 0.002425 0.001818 0.816305 0.179452

MOTIF 4-CAAAGAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003695 0.989842 0.002769 0.003695
 0.901165 0.002769 0.002769 0.093297
 0.990768 0.002769 0.002769 0.003695
 0.811562 0.002769 0.092372 0.093297
 0.003695 0.002769 0.989842 0.003695
 0.721671 0.092372 0.182263 0.003695
 0.990768 0.002769 0.002769 0.003695
 0.003695 0.272444 0.002769 0.721093

MOTIF 5-CGCAGAYA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.0e+000
 0.165491 0.832321 0.000937 0.001251
 0.061923 0.031274 0.814445 0.092357
 0.031587 0.966225 0.000937 0.001251
 0.905865 0.000937 0.031274 0.061923
 0.044145 0.031274 0.862657 0.061923
 0.728970 0.104505 0.134939 0.031587
 0.031587 0.555507 0.061610 0.351296
 0.893307 0.000937 0.104505 0.001251

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/duxl-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_duxl-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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