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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.314 C 0.186 G 0.186 T 0.314 

MOTIF 1-ATAATCCK STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 2.4e-001
 0.647636 0.302145 0.001258 0.048962
 0.002121 0.001258 0.001258 0.995364
 0.948523 0.001258 0.001258 0.048962
 0.995364 0.001258 0.001258 0.002121
 0.002121 0.048098 0.001258 0.948523
 0.002121 0.994500 0.001258 0.002121
 0.095802 0.637074 0.001258 0.265866
 0.002121 0.048098 0.618716 0.331064

MOTIF 2-MCAKMTGK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 7.7e-001
 0.516422 0.439731 0.000920 0.042926
 0.235385 0.762143 0.000920 0.001552
 0.996607 0.000920 0.000920 0.001552
 0.001552 0.061739 0.376111 0.560598
 0.560598 0.376111 0.061739 0.001552
 0.001552 0.000920 0.000920 0.996607
 0.001552 0.000920 0.762143 0.235385
 0.042926 0.000920 0.439731 0.516422

MOTIF 3-AGAAAATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 8.8e-001
 0.777140 0.042105 0.109266 0.071489
 0.005034 0.043332 0.934912 0.016721
 0.870348 0.031047 0.033892 0.064712
 0.823672 0.039097 0.040473 0.096758
 0.849146 0.048420 0.023100 0.079333
 0.835273 0.066071 0.080466 0.018190
 0.199017 0.128767 0.048472 0.623744
 0.159798 0.080414 0.672146 0.087642

MOTIF 4-AACCAATT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.754451 0.164863 0.023933 0.056752
 0.917857 0.023933 0.001458 0.056752
 0.111396 0.775926 0.001458 0.111220
 0.024934 0.862387 0.001458 0.111220
 0.940332 0.055751 0.001458 0.002459
 0.940332 0.055751 0.001458 0.002459
 0.002459 0.001458 0.001458 0.994626
 0.056752 0.001458 0.055751 0.886039

MOTIF 5-ATAAACTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.937627 0.016918 0.016918 0.028536
 0.028536 0.016918 0.016918 0.937627
 0.937627 0.016918 0.016918 0.028536
 0.937627 0.016918 0.016918 0.028536
 0.937627 0.016918 0.016918 0.028536
 0.028536 0.926009 0.016918 0.028536
 0.028536 0.016918 0.016918 0.937627
 0.028536 0.926009 0.016918 0.028536

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/dsc-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_dsc-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	0.97 seconds
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