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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.241 C 0.259 G 0.259 T 0.241 

MOTIF 1-TGCACCAY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003799 0.004077 0.004077 0.988047
 0.003799 0.113262 0.769955 0.112984
 0.003799 0.879140 0.004077 0.112984
 0.878687 0.004077 0.004077 0.113160
 0.003799 0.988325 0.004077 0.003799
 0.003799 0.988325 0.004077 0.003799
 0.988047 0.004077 0.004077 0.003799
 0.003799 0.659714 0.004077 0.332410

MOTIF 2-CRGCCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.001872 0.886679 0.002008 0.109441
 0.648328 0.002008 0.347792 0.001872
 0.001872 0.055793 0.940464 0.001872
 0.001872 0.671194 0.002008 0.324926
 0.001872 0.994249 0.002008 0.001872
 0.994112 0.002008 0.002008 0.001872
 0.001872 0.240223 0.540722 0.217184
 0.001872 0.886506 0.002008 0.109614

MOTIF 3-AGAGTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.810191 0.002277 0.124431 0.063101
 0.063101 0.027520 0.907257 0.002122
 0.968081 0.027520 0.002277 0.002122
 0.063101 0.124235 0.663340 0.149323
 0.063101 0.063256 0.063256 0.810387
 0.027365 0.002277 0.907257 0.063101
 0.063101 0.810542 0.002277 0.124080
 0.809797 0.002277 0.185804 0.002122

MOTIF 4-AAGGTGGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.991252 0.002984 0.002984 0.002781
 0.718188 0.082893 0.163059 0.035860
 0.002781 0.002984 0.958375 0.035860
 0.002781 0.162802 0.831637 0.002781
 0.002781 0.002984 0.046039 0.948196
 0.082690 0.082893 0.831637 0.002781
 0.002781 0.082893 0.911546 0.002781
 0.082690 0.082893 0.751728 0.082690

MOTIF 5-ACCGCCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.988052 0.004075 0.004075 0.003798
 0.003798 0.988329 0.004075 0.003798
 0.003798 0.879182 0.004075 0.112945
 0.003798 0.004075 0.988329 0.003798
 0.003798 0.988329 0.004075 0.003798
 0.003798 0.879182 0.004075 0.112945
 0.113120 0.769860 0.113222 0.003798
 0.003798 0.769332 0.223072 0.003798

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/drap-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_drap-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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