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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.294 C 0.206 G 0.206 T 0.294 

MOTIF 1-TTAATAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.068771 0.001964 0.134127 0.795138
 0.002796 0.001964 0.001964 0.993277
 0.927302 0.067939 0.001964 0.002796
 0.861114 0.001964 0.001964 0.134959
 0.134959 0.067939 0.001964 0.795138
 0.861326 0.067939 0.001964 0.068771
 0.927302 0.067939 0.001964 0.002796
 0.068877 0.001964 0.860282 0.068877

MOTIF 2-AYTTCWGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.992255 0.002262 0.002262 0.003220
 0.003220 0.610786 0.002262 0.383731
 0.231478 0.002262 0.002262 0.763998
 0.003220 0.002262 0.002262 0.992255
 0.079225 0.915293 0.002262 0.003220
 0.611744 0.002262 0.078266 0.307727
 0.079225 0.002262 0.915293 0.003220
 0.916251 0.002262 0.078266 0.003220

MOTIF 3-CAAACTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.003121 0.813776 0.002192 0.180911
 0.697893 0.075843 0.223144 0.003121
 0.845194 0.075843 0.075843 0.003121
 0.918845 0.075843 0.002192 0.003121
 0.003121 0.991567 0.002192 0.003121
 0.003121 0.002192 0.002192 0.992495
 0.003121 0.002192 0.991567 0.003121
 0.771543 0.223144 0.002192 0.003121

MOTIF 4-AAKATMTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.958032 0.036938 0.002075 0.002954
 0.818469 0.002075 0.106663 0.072792
 0.002954 0.078581 0.525240 0.393225
 0.853444 0.002075 0.141526 0.002954
 0.002954 0.141526 0.002075 0.853444
 0.393225 0.525240 0.078581 0.002954
 0.072792 0.106663 0.002075 0.818469
 0.002954 0.002075 0.036938 0.958032

MOTIF 5-CCCAATCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.144525 0.708848 0.002103 0.144525
 0.002994 0.921258 0.072755 0.002994
 0.073645 0.638424 0.002103 0.285828
 0.992801 0.002103 0.002103 0.002994
 0.851497 0.002103 0.002103 0.144297
 0.002994 0.002103 0.002103 0.992801
 0.002994 0.921258 0.002103 0.073645
 0.780845 0.143406 0.002103 0.073645

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/dpff-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_dpff-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n02.farnam.hpc.yale.internal
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FINALTIME:	1.13 seconds
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