********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-CCCTTTTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.022182 0.022182 0.932364
 0.023273 0.022182 0.022182 0.932364
 0.023273 0.022182 0.022182 0.932364
 0.023273 0.022182 0.022182 0.932364
 0.023273 0.931273 0.022182 0.023273

MOTIF 2-CACCCGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.102089 0.792357 0.101918 0.003636
 0.989432 0.003466 0.003466 0.003636
 0.003636 0.989262 0.003466 0.003636
 0.003636 0.890809 0.003466 0.102089
 0.299947 0.692952 0.003466 0.003636
 0.003636 0.003466 0.989262 0.003636
 0.003636 0.003466 0.989262 0.003636
 0.693758 0.003466 0.200688 0.102089

MOTIF 3-CCGATCAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004035 0.988085 0.003846 0.004035
 0.113277 0.878843 0.003846 0.004035
 0.004035 0.113088 0.878843 0.004035
 0.879032 0.003846 0.003846 0.113277
 0.004035 0.113088 0.003846 0.879032
 0.004035 0.988085 0.003846 0.004035
 0.879032 0.113088 0.003846 0.004035
 0.113277 0.003846 0.003846 0.879032

MOTIF 4-CTGGAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003495 0.989679 0.003331 0.003495
 0.003495 0.003331 0.003331 0.989843
 0.098121 0.003331 0.800427 0.098121
 0.003495 0.097957 0.800427 0.098121
 0.950671 0.042503 0.003331 0.003495
 0.895217 0.003331 0.003331 0.098121
 0.895217 0.003331 0.003331 0.098121
 0.895217 0.003331 0.097957 0.003495

MOTIF 5-CGAAGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003036 0.991036 0.002893 0.003036
 0.003036 0.002893 0.991036 0.003036
 0.991178 0.002893 0.002893 0.003036
 0.744342 0.002893 0.167539 0.085226
 0.003036 0.002893 0.908845 0.085226
 0.991178 0.002893 0.002893 0.003036
 0.908987 0.002893 0.002893 0.085226
 0.661620 0.250260 0.085084 0.003036

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/dmd-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_dmd-4/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n12.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.70 seconds
********************************************************************************