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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-CTCGAACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 8.8e-001
 0.024209 0.930336 0.021245 0.024209
 0.024209 0.021245 0.021245 0.933300
 0.024209 0.930336 0.021245 0.024209
 0.024209 0.021245 0.930336 0.024209
 0.933300 0.021245 0.021245 0.024209
 0.933300 0.021245 0.021245 0.024209
 0.024209 0.930336 0.021245 0.024209
 0.024209 0.930336 0.021245 0.024209

MOTIF 2-GYCTGCGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002533 0.002223 0.860874 0.134371
 0.002533 0.463869 0.068142 0.465457
 0.068452 0.926793 0.002223 0.002533
 0.002533 0.002223 0.002223 0.993022
 0.002533 0.002223 0.992712 0.002533
 0.002533 0.926793 0.002223 0.068452
 0.002533 0.068142 0.926793 0.002533
 0.002533 0.002223 0.200192 0.795053

MOTIF 3-ACGAGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.989599 0.003313 0.003313 0.003775
 0.003775 0.989137 0.003313 0.003775
 0.102039 0.003313 0.792608 0.102039
 0.989599 0.003313 0.003313 0.003775
 0.102039 0.003313 0.890872 0.003775
 0.989599 0.003313 0.003313 0.003775
 0.003775 0.989137 0.003313 0.003775
 0.793070 0.101577 0.101577 0.003775

MOTIF 4-AWAGTGGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.988457 0.003677 0.003677 0.004190
 0.550142 0.003677 0.003677 0.442504
 0.988457 0.003677 0.003677 0.004190
 0.004190 0.003677 0.987944 0.004190
 0.004190 0.003677 0.003677 0.988457
 0.004190 0.003677 0.769493 0.222641
 0.113240 0.003677 0.878894 0.004190
 0.004190 0.003677 0.003677 0.988457

MOTIF 5-CCACGAAY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.085416 0.908650 0.002773 0.003160
 0.003160 0.826394 0.002773 0.167672
 0.909037 0.085029 0.002773 0.003160
 0.085416 0.908650 0.002773 0.003160
 0.003160 0.002773 0.990906 0.003160
 0.991293 0.002773 0.002773 0.003160
 0.909037 0.085029 0.002773 0.003160
 0.085416 0.332593 0.085029 0.496961

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/dao-5.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_dao-5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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