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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.231 G 0.231 T 0.27 

MOTIF 1-TGCATGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.196417 0.001893 0.001893 0.799797
 0.059140 0.001893 0.856403 0.082564
 0.059140 0.822900 0.058820 0.059140
 0.823221 0.115746 0.001893 0.059140
 0.116067 0.115746 0.001893 0.766294
 0.059140 0.058820 0.708437 0.173604
 0.002213 0.115746 0.173284 0.708757
 0.002213 0.058820 0.936754 0.002213

MOTIF 2-AGAAAAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.933591 0.020955 0.020955 0.024500
 0.024500 0.020955 0.930045 0.024500
 0.933591 0.020955 0.020955 0.024500
 0.933591 0.020955 0.020955 0.024500
 0.933591 0.020955 0.020955 0.024500
 0.933591 0.020955 0.020955 0.024500
 0.024500 0.020955 0.930045 0.024500
 0.024500 0.020955 0.930045 0.024500

MOTIF 3-AGTACACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.900811 0.002984 0.092716 0.003489
 0.003489 0.002984 0.990038 0.003489
 0.182953 0.092716 0.182448 0.541882
 0.811079 0.002984 0.002984 0.182953
 0.003489 0.990038 0.002984 0.003489
 0.811079 0.092716 0.092716 0.003489
 0.093221 0.720842 0.002984 0.182953
 0.182953 0.002984 0.720842 0.093221

MOTIF 4-ACCACTCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.982878 0.005403 0.005403 0.006317
 0.006317 0.981963 0.005403 0.006317
 0.006317 0.981963 0.005403 0.006317
 0.982878 0.005403 0.005403 0.006317
 0.006317 0.819494 0.005403 0.168787
 0.168787 0.005403 0.005403 0.820408
 0.006317 0.819494 0.005403 0.168787
 0.006317 0.005403 0.167872 0.820408

MOTIF 5-AWAGAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.982907 0.005393 0.005393 0.006306
 0.656794 0.005393 0.005393 0.332420
 0.820720 0.167580 0.005393 0.006306
 0.006306 0.005393 0.981995 0.006306
 0.982907 0.005393 0.005393 0.006306
 0.982907 0.005393 0.005393 0.006306
 0.820720 0.167580 0.005393 0.006306
 0.006306 0.005393 0.005393 0.982907

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/daf-12.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_daf-12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	0.57 seconds
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