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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-GATAAGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 2.5e-002
 0.038760 0.001123 0.958557 0.001561
 0.996194 0.001123 0.001123 0.001561
 0.001561 0.038322 0.001123 0.958995
 0.996194 0.001123 0.001123 0.001561
 0.996194 0.001123 0.001123 0.001561
 0.001561 0.063690 0.895989 0.038760
 0.831436 0.075641 0.091362 0.001561
 0.756394 0.016522 0.188324 0.038760

MOTIF 2-ACGTGGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 4.9e-002
 0.902170 0.000718 0.024538 0.072574
 0.058689 0.915814 0.024500 0.000998
 0.008063 0.000718 0.990222 0.000998
 0.000998 0.024500 0.000718 0.973785
 0.000998 0.000718 0.997287 0.000998
 0.007405 0.000718 0.947611 0.044266
 0.046852 0.880010 0.024500 0.048638
 0.812933 0.024500 0.120593 0.041975

MOTIF 3-CAGAGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.5e-002
 0.003965 0.989216 0.002853 0.003965
 0.895809 0.002853 0.097373 0.003965
 0.003965 0.002853 0.894696 0.098486
 0.801289 0.097373 0.097373 0.003965
 0.003965 0.002853 0.989216 0.003965
 0.990329 0.002853 0.002853 0.003965
 0.895809 0.002853 0.002853 0.098486
 0.705855 0.002853 0.287327 0.003965

MOTIF 4-AACACCGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.987442 0.003704 0.003704 0.005149
 0.864705 0.126442 0.003704 0.005149
 0.005149 0.985997 0.003704 0.005149
 0.987442 0.003704 0.003704 0.005149
 0.005149 0.740523 0.126442 0.127887
 0.005149 0.985997 0.003704 0.005149
 0.005149 0.003704 0.863260 0.127887
 0.127887 0.126442 0.003704 0.741968

MOTIF 5-WACTGAWA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.613305 0.001548 0.001548 0.383598
 0.994751 0.001548 0.001548 0.002152
 0.002152 0.994147 0.001548 0.002152
 0.002152 0.155450 0.001548 0.840849
 0.002152 0.001548 0.891546 0.104754
 0.994751 0.001548 0.001548 0.002152
 0.568617 0.001548 0.001548 0.428286
 0.994751 0.001548 0.001548 0.002152

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/crh-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_crh-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.10 seconds
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