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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-CATCTGTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 4.9e-002
 0.000895 0.997410 0.000799 0.000895
 0.950530 0.024288 0.000799 0.024384
 0.000895 0.005292 0.119002 0.874811
 0.040402 0.934416 0.024288 0.000895
 0.000895 0.000799 0.000799 0.997507
 0.000895 0.000799 0.997410 0.000895
 0.000895 0.164071 0.024288 0.810746
 0.000895 0.798936 0.000799 0.199370

MOTIF 2-ATTGAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.990835 0.002937 0.002937 0.003291
 0.003291 0.089275 0.002937 0.904497
 0.003291 0.089275 0.002937 0.904497
 0.176244 0.002937 0.731191 0.089628
 0.955094 0.002937 0.038678 0.003291
 0.003291 0.002937 0.990481 0.003291
 0.818021 0.089413 0.089275 0.003291
 0.990835 0.002937 0.002937 0.003291

MOTIF 3-ACAATGTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.915969 0.078551 0.002584 0.002896
 0.002896 0.915657 0.002584 0.078863
 0.991936 0.002584 0.002584 0.002896
 0.763790 0.078551 0.154763 0.002896
 0.002896 0.002584 0.154763 0.839757
 0.002896 0.002584 0.991625 0.002896
 0.155074 0.002584 0.078551 0.763790
 0.002896 0.991625 0.002584 0.002896

MOTIF 4-GCAAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003412 0.003046 0.810792 0.182750
 0.003412 0.900605 0.092570 0.003412
 0.900972 0.003046 0.092570 0.003412
 0.990497 0.003046 0.003046 0.003412
 0.003412 0.003046 0.810792 0.182750
 0.990497 0.003046 0.003046 0.003412
 0.990497 0.003046 0.003046 0.003412
 0.900972 0.003046 0.092570 0.003412

MOTIF 5-GAATGTAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.078921 0.002586 0.763550 0.154944
 0.991930 0.002586 0.002586 0.002898
 0.763616 0.154877 0.002586 0.078921
 0.154944 0.002586 0.002586 0.839884
 0.002898 0.002586 0.991618 0.002898
 0.002898 0.002586 0.002586 0.991930
 0.763616 0.154877 0.002586 0.078921
 0.155188 0.002586 0.078609 0.763616

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/cnd-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_cnd-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.13 seconds
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