********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-AATTCAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 2.4e-002
 0.912153 0.032631 0.032631 0.022585
 0.965078 0.000876 0.032631 0.001415
 0.007488 0.101862 0.000876 0.889773
 0.033170 0.089215 0.014021 0.863594
 0.001415 0.996295 0.000876 0.001415
 0.824734 0.000876 0.155865 0.018525
 0.933221 0.000876 0.064488 0.001415
 0.001415 0.000876 0.000876 0.996833

MOTIF 2-AATTTGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.566987 0.144171 0.143865 0.144977
 0.947799 0.001309 0.048777 0.002115
 0.002115 0.048777 0.001309 0.947799
 0.049582 0.001309 0.239568 0.709540
 0.002115 0.001309 0.001309 0.995267
 0.002115 0.001309 0.994461 0.002115
 0.995267 0.001309 0.001309 0.002115
 0.002115 0.001309 0.001309 0.995267

MOTIF 3-AGGAGAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.915282 0.001461 0.054419 0.028838
 0.002359 0.001461 0.934439 0.061741
 0.324263 0.001461 0.671917 0.002359
 0.941761 0.001461 0.054419 0.002359
 0.002359 0.001461 0.993821 0.002359
 0.728901 0.054419 0.214321 0.002359
 0.994719 0.001461 0.001461 0.002359
 0.002359 0.001461 0.993821 0.002359

MOTIF 4-AAATTGGW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.990207 0.002709 0.002709 0.004375
 0.990207 0.002709 0.002709 0.004375
 0.990207 0.002709 0.002709 0.004375
 0.004375 0.100911 0.100911 0.793802
 0.004375 0.002709 0.002709 0.990207
 0.004375 0.002709 0.988541 0.004375
 0.004375 0.002709 0.988541 0.004375
 0.595494 0.002709 0.002709 0.399089

MOTIF 5-CCTAATTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.076877 0.696307 0.075628 0.151188
 0.003279 0.917814 0.002030 0.076877
 0.076877 0.002030 0.002030 0.919063
 0.919063 0.002030 0.075628 0.003279
 0.919063 0.075628 0.002030 0.003279
 0.003279 0.002030 0.002030 0.992661
 0.033746 0.002030 0.002030 0.962194
 0.919063 0.002030 0.002030 0.076877

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ces-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ces-1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.13 seconds
********************************************************************************