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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-CTAGKCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 4.8e-003
 0.001498 0.995807 0.001198 0.001498
 0.001498 0.001198 0.001198 0.996107
 0.921254 0.076051 0.001198 0.001498
 0.001498 0.001198 0.995807 0.001498
 0.001498 0.001198 0.506153 0.491152
 0.001498 0.995807 0.001198 0.001498
 0.001498 0.995807 0.001198 0.001498
 0.883647 0.113658 0.001198 0.001498

MOTIF 2-CCGTGTAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.2e-001
 0.002251 0.712097 0.170869 0.114782
 0.002251 0.926777 0.057976 0.012996
 0.002251 0.001801 0.993696 0.002251
 0.002251 0.001801 0.001801 0.994147
 0.002251 0.001801 0.993696 0.002251
 0.002251 0.057976 0.001801 0.937972
 0.994147 0.001801 0.001801 0.002251
 0.002251 0.824991 0.170507 0.002251

MOTIF 3-CCGCGGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.003590 0.989948 0.002872 0.003590
 0.003590 0.989948 0.002872 0.003590
 0.003590 0.092448 0.900372 0.003590
 0.003590 0.989948 0.002872 0.003590
 0.003590 0.002872 0.989948 0.003590
 0.003590 0.002872 0.989948 0.003590
 0.176302 0.817236 0.002872 0.003590
 0.003590 0.989948 0.002872 0.003590

MOTIF 4-AAACCGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.807837 0.001984 0.187698 0.002481
 0.869741 0.001984 0.063889 0.064385
 0.869741 0.001984 0.001984 0.126290
 0.002481 0.807141 0.063889 0.126489
 0.002481 0.869245 0.001984 0.126290
 0.002481 0.001984 0.993054 0.002481
 0.931646 0.063889 0.001984 0.002481
 0.064385 0.807141 0.125993 0.002481

MOTIF 5-TRATAWTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.001854 0.001483 0.001483 0.995179
 0.557215 0.001483 0.327610 0.113692
 0.902644 0.001483 0.094019 0.001854
 0.001854 0.001483 0.001483 0.995179
 0.995179 0.001483 0.001483 0.001854
 0.420665 0.047751 0.047751 0.483833
 0.001854 0.140286 0.001483 0.856376
 0.048122 0.001483 0.159440 0.790955

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-90.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-90/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.18 seconds
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