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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-RAGATGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.495812 0.004188 0.495331 0.004669
 0.741384 0.004188 0.249759 0.004669
 0.004669 0.249759 0.618116 0.127455
 0.986955 0.004188 0.004188 0.004669
 0.004669 0.126973 0.004188 0.864170
 0.004669 0.004188 0.986473 0.004669
 0.741384 0.249759 0.004188 0.004669
 0.986955 0.004188 0.004188 0.004669

MOTIF 2-CCYACCKR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.046284 0.736697 0.108304 0.108715
 0.003983 0.988462 0.003572 0.003983
 0.108715 0.569534 0.003572 0.318179
 0.988873 0.003572 0.003572 0.003983
 0.003983 0.778998 0.003572 0.213447
 0.003983 0.778998 0.108304 0.108715
 0.108715 0.108304 0.464802 0.318179
 0.422912 0.150605 0.422501 0.003983

MOTIF 3-AGTGATGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.933055 0.021491 0.021491 0.023964
 0.023964 0.021491 0.930582 0.023964
 0.023964 0.021491 0.021491 0.933055
 0.023964 0.021491 0.930582 0.023964
 0.933055 0.021491 0.021491 0.023964
 0.023964 0.021491 0.021491 0.933055
 0.023964 0.021491 0.930582 0.023964
 0.023964 0.021491 0.930582 0.023964

MOTIF 4-CAAACATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 3 P= 1.0e+000
 0.023964 0.930582 0.021491 0.023964
 0.933055 0.021491 0.021491 0.023964
 0.933055 0.021491 0.021491 0.023964
 0.933055 0.021491 0.021491 0.023964
 0.023964 0.930582 0.021491 0.023964
 0.933055 0.021491 0.021491 0.023964
 0.023964 0.021491 0.021491 0.933055
 0.023964 0.021491 0.930582 0.023964

MOTIF 5-CACTATTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 3 P= 1.0e+000
 0.023964 0.930582 0.021491 0.023964
 0.933055 0.021491 0.021491 0.023964
 0.023964 0.930582 0.021491 0.023964
 0.023964 0.021491 0.021491 0.933055
 0.933055 0.021491 0.021491 0.023964
 0.023964 0.021491 0.021491 0.933055
 0.023964 0.021491 0.021491 0.933055
 0.023964 0.021491 0.021491 0.933055

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-9.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.29 seconds
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