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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.289 C 0.211 G 0.211 T 0.289 

MOTIF 1-AAATTTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 3.0e-001
 0.992125 0.002334 0.002334 0.003207
 0.761421 0.079153 0.002334 0.157092
 0.883382 0.034135 0.079277 0.003207
 0.003207 0.002334 0.079153 0.915306
 0.035008 0.002334 0.156467 0.806191
 0.080026 0.002334 0.002334 0.915306
 0.003207 0.002334 0.991251 0.003207
 0.992125 0.002334 0.002334 0.003207

MOTIF 2-GCTCAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.002753 0.002003 0.992491 0.002753
 0.134832 0.860412 0.002003 0.002753
 0.134832 0.002003 0.002003 0.861162
 0.002753 0.860412 0.002003 0.134832
 0.861162 0.134082 0.002003 0.002753
 0.927307 0.002003 0.067937 0.002753
 0.861374 0.002003 0.067937 0.068686
 0.927307 0.002003 0.002003 0.068686

MOTIF 3-ACACCTGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 7.6e-001
 0.918683 0.002241 0.002241 0.076835
 0.003079 0.844088 0.002241 0.150591
 0.771171 0.002241 0.075997 0.150591
 0.150591 0.739800 0.002241 0.107368
 0.107368 0.813556 0.075997 0.003079
 0.003079 0.075997 0.002241 0.918683
 0.076835 0.002241 0.696577 0.224347
 0.076835 0.844088 0.002241 0.076835

MOTIF 4-AAYTWCMG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.995871 0.001224 0.001224 0.001682
 0.777674 0.001224 0.162468 0.058634
 0.041960 0.622596 0.001224 0.334220
 0.001682 0.001224 0.001224 0.995871
 0.485544 0.001224 0.001224 0.512009
 0.041960 0.955134 0.001224 0.001682
 0.363575 0.512554 0.122189 0.001682
 0.203464 0.001224 0.793630 0.001682

MOTIF 5-GAGACCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.004561 0.003319 0.987559 0.004561
 0.988801 0.003319 0.003319 0.004561
 0.004561 0.003319 0.878316 0.113804
 0.988801 0.003319 0.003319 0.004561
 0.223398 0.768722 0.003319 0.004561
 0.004561 0.659479 0.112562 0.223398
 0.004561 0.987559 0.003319 0.004561
 0.223398 0.003319 0.768722 0.004561

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-83.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-83/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.12 seconds
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