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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.241 C 0.259 G 0.259 T 0.241 

MOTIF 1-AGACGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.931036 0.023509 0.023509 0.021945
 0.021945 0.023509 0.932600 0.021945
 0.931036 0.023509 0.023509 0.021945
 0.021945 0.932600 0.023509 0.021945
 0.021945 0.023509 0.932600 0.021945
 0.021945 0.932600 0.023509 0.021945
 0.931036 0.023509 0.023509 0.021945
 0.021945 0.023509 0.932600 0.021945

MOTIF 2-CGCGACGM STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.203910 0.557006 0.237673 0.001410
 0.163541 0.042011 0.752538 0.041910
 0.001410 0.874103 0.082576 0.041910
 0.001410 0.150695 0.846484 0.001410
 0.955068 0.001511 0.001511 0.041910
 0.001410 0.995668 0.001511 0.001410
 0.001410 0.001511 0.995668 0.001410
 0.572490 0.303088 0.001511 0.122910

MOTIF 3-ACCGTATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.931036 0.023509 0.023509 0.021945
 0.021945 0.932600 0.023509 0.021945
 0.021945 0.932600 0.023509 0.021945
 0.021945 0.023509 0.932600 0.021945
 0.021945 0.023509 0.023509 0.931036
 0.931036 0.023509 0.023509 0.021945
 0.021945 0.023509 0.023509 0.931036
 0.931036 0.023509 0.023509 0.021945

MOTIF 4-TAATTTTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002836 0.084482 0.003039 0.909643
 0.909643 0.003039 0.003039 0.084280
 0.501376 0.166187 0.084482 0.247955
 0.084280 0.003039 0.003039 0.909643
 0.002836 0.003039 0.003039 0.991087
 0.002836 0.084482 0.003039 0.909643
 0.002836 0.003039 0.003039 0.991087
 0.002836 0.899966 0.094361 0.002836

MOTIF 5-AACACGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.908741 0.003069 0.003069 0.085121
 0.826221 0.167846 0.003069 0.002865
 0.002865 0.908946 0.003069 0.085121
 0.908741 0.085325 0.003069 0.002865
 0.002865 0.991202 0.003069 0.002865
 0.002865 0.003069 0.826425 0.167642
 0.002865 0.991202 0.003069 0.002865
 0.002865 0.167846 0.744169 0.085121

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-82.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-82/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.34 seconds
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