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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.302 C 0.198 G 0.198 T 0.302 

MOTIF 1-TARTWGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.002110 0.001377 0.001377 0.995135
 0.995135 0.001377 0.001377 0.002110
 0.658867 0.001377 0.337646 0.002110
 0.002110 0.049720 0.166416 0.781754
 0.292474 0.118074 0.194902 0.394549
 0.002110 0.001377 0.994403 0.002110
 0.678425 0.001377 0.001377 0.318820
 0.995135 0.001377 0.001377 0.002110

MOTIF 2-AATCAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.991745 0.002338 0.002338 0.003580
 0.991745 0.002338 0.002338 0.003580
 0.003580 0.084375 0.002338 0.909707
 0.003580 0.990502 0.002338 0.003580
 0.991745 0.002338 0.002338 0.003580
 0.827406 0.002338 0.002338 0.167919
 0.662801 0.249244 0.084375 0.003580
 0.003580 0.002338 0.002338 0.991745

MOTIF 3-CTTTTTCY STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.003432 0.990895 0.002241 0.003432
 0.003432 0.002241 0.002241 0.992086
 0.082077 0.080886 0.002241 0.834797
 0.082077 0.002241 0.002241 0.913441
 0.003432 0.002241 0.002241 0.992086
 0.003432 0.002241 0.159783 0.834544
 0.160974 0.833353 0.002241 0.003432
 0.003432 0.595634 0.080886 0.320048

MOTIF 4-CGCCAMCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.145818 0.844103 0.003981 0.006098
 0.006098 0.003981 0.983824 0.006098
 0.006098 0.983824 0.003981 0.006098
 0.006098 0.983824 0.003981 0.006098
 0.985940 0.003981 0.003981 0.006098
 0.425708 0.424493 0.003981 0.145818
 0.006098 0.983824 0.003981 0.006098
 0.006098 0.003981 0.003981 0.985940

MOTIF 5-CAWKMWTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.227349 0.768025 0.001827 0.002799
 0.961483 0.001827 0.033891 0.002799
 0.594365 0.001827 0.001827 0.401981
 0.002799 0.001827 0.644351 0.351023
 0.351023 0.644351 0.001827 0.002799
 0.401981 0.001827 0.001827 0.594365
 0.002799 0.033891 0.001827 0.961483
 0.002799 0.001827 0.768025 0.227349

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-8.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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