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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.277 C 0.223 G 0.223 T 0.277 

MOTIF 1-CAGCTGCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.2e-001
 0.034677 0.896233 0.001071 0.068019
 0.796413 0.001071 0.167839 0.034677
 0.034677 0.114956 0.782348 0.068019
 0.001334 0.662673 0.101153 0.234840
 0.034677 0.034414 0.001071 0.929838
 0.034730 0.101153 0.829440 0.034677
 0.081822 0.849033 0.034414 0.034730
 0.168209 0.001071 0.034414 0.796306

MOTIF 2-CGAACCCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.004373 0.987741 0.003512 0.004373
 0.004373 0.112832 0.878421 0.004373
 0.879282 0.003512 0.003512 0.113693
 0.879282 0.003512 0.112832 0.004373
 0.004373 0.878421 0.003512 0.113693
 0.004373 0.987741 0.003512 0.004373
 0.004373 0.987741 0.003512 0.004373
 0.113693 0.222152 0.550462 0.113693

MOTIF 3-CCAGCACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.059221 0.822786 0.058772 0.059221
 0.059221 0.879729 0.001830 0.059221
 0.913548 0.058772 0.001830 0.025851
 0.196862 0.001830 0.628201 0.173107
 0.059221 0.595014 0.172658 0.173107
 0.994063 0.001830 0.001830 0.002278
 0.116164 0.879729 0.001830 0.002278
 0.002278 0.172658 0.822786 0.002278

MOTIF 4-ACGCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.934300 0.020245 0.020245 0.025209
 0.025209 0.929336 0.020245 0.025209
 0.025209 0.020245 0.929336 0.025209
 0.025209 0.929336 0.020245 0.025209
 0.934300 0.020245 0.020245 0.025209
 0.025209 0.929336 0.020245 0.025209
 0.934300 0.020245 0.020245 0.025209
 0.025209 0.929336 0.020245 0.025209

MOTIF 5-AGAAAAMA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.990155 0.003034 0.003034 0.003778
 0.003778 0.003034 0.989411 0.003778
 0.990155 0.003034 0.003034 0.003778
 0.895731 0.097458 0.003034 0.003778
 0.990155 0.003034 0.003034 0.003778
 0.951067 0.003034 0.003034 0.042866
 0.421476 0.382561 0.003034 0.192930
 0.990155 0.003034 0.003034 0.003778

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-79.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-79/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.19 seconds
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