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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.216 G 0.216 T 0.283 

MOTIF 1-AAGGAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.922622 0.072319 0.002190 0.002868
 0.682527 0.242285 0.072319 0.002868
 0.002868 0.002190 0.992073 0.002868
 0.002868 0.002190 0.851816 0.143125
 0.922622 0.002190 0.072319 0.002868
 0.922622 0.002190 0.002190 0.072997
 0.992751 0.002190 0.002190 0.002868
 0.002868 0.002190 0.312414 0.682527

MOTIF 2-AATTTCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.934864 0.019682 0.019682 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.928773 0.019682 0.025773
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.928773 0.019682 0.025773

MOTIF 3-AATGAATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.934864 0.019682 0.019682 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.019682 0.928773 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.019682 0.928773 0.025773

MOTIF 4-CAACATGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.140348 0.786040 0.002145 0.071467
 0.855584 0.070804 0.070804 0.002808
 0.855584 0.070804 0.070804 0.002808
 0.031231 0.895157 0.002145 0.071467
 0.855584 0.070804 0.070804 0.002808
 0.002808 0.002145 0.002145 0.992903
 0.071467 0.002145 0.786040 0.140348
 0.002808 0.070804 0.854920 0.071467

MOTIF 5-AGAAGATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.3e-001
 0.934864 0.019682 0.019682 0.025773
 0.025773 0.019682 0.928773 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.025773 0.019682 0.928773 0.025773
 0.934864 0.019682 0.019682 0.025773
 0.025773 0.019682 0.019682 0.934864
 0.025773 0.019682 0.928773 0.025773

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-63.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-63/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.05 seconds
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