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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.392 C 0.108 G 0.108 T 0.392 

MOTIF 1-CWTWAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.003269 0.934740 0.058722 0.003269
 0.409732 0.000902 0.000902 0.588464
 0.234551 0.000902 0.000902 0.763646
 0.527093 0.000902 0.000902 0.471103
 0.937107 0.000902 0.000902 0.061090
 0.646285 0.000902 0.176083 0.176731
 0.994927 0.000902 0.000902 0.003269
 0.994927 0.000902 0.000902 0.003269

MOTIF 2-AYTSTAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.972098 0.004960 0.004960 0.017982
 0.017982 0.641038 0.004960 0.336021
 0.017982 0.004960 0.004960 0.972098
 0.017982 0.641038 0.322999 0.017982
 0.017982 0.004960 0.004960 0.972098
 0.972098 0.004960 0.004960 0.017982
 0.972098 0.004960 0.004960 0.017982
 0.972098 0.004960 0.004960 0.017982

MOTIF 3-AAAATTRK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.989267 0.001908 0.001908 0.006917
 0.989267 0.001908 0.001908 0.006917
 0.744589 0.124247 0.001908 0.129256
 0.989267 0.001908 0.001908 0.006917
 0.006917 0.001908 0.001908 0.989267
 0.006917 0.124247 0.001908 0.866928
 0.251595 0.246586 0.494903 0.006917
 0.006917 0.001908 0.372564 0.618611

MOTIF 4-TTAATAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.035627 0.009827 0.009827 0.944718
 0.035627 0.009827 0.009827 0.944718
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627
 0.035627 0.009827 0.009827 0.944718
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627

MOTIF 5-AAAAATGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 3 P= 1.0e+000
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627
 0.944718 0.009827 0.009827 0.035627
 0.035627 0.009827 0.009827 0.944718
 0.035627 0.009827 0.918918 0.035627
 0.944718 0.009827 0.009827 0.035627

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-62.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-62/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	0.25 seconds
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