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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-AATGGACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.991914 0.002770 0.002770 0.002545
 0.844543 0.002770 0.076456 0.076231
 0.076231 0.002770 0.002770 0.918228
 0.002545 0.002770 0.992140 0.002545
 0.002545 0.076456 0.844768 0.076231
 0.887725 0.033274 0.002770 0.076231
 0.150154 0.622761 0.224541 0.002545
 0.918228 0.002770 0.076456 0.002545

MOTIF 2-AACTGAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.780115 0.073291 0.144154 0.002440
 0.921613 0.073291 0.002656 0.002440
 0.073075 0.780558 0.143927 0.002440
 0.002440 0.002656 0.073291 0.921613
 0.073075 0.073291 0.851194 0.002440
 0.992249 0.002656 0.002656 0.002440
 0.073075 0.073291 0.709923 0.143711
 0.002440 0.992465 0.002656 0.002440

MOTIF 3-CCTCCCAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.001771 0.922010 0.053216 0.023003
 0.023003 0.818940 0.001928 0.156129
 0.053059 0.053216 0.156286 0.737439
 0.001771 0.840502 0.053216 0.104511
 0.001771 0.840502 0.053216 0.104511
 0.001771 0.840667 0.001928 0.155633
 0.917441 0.027572 0.053216 0.001771
 0.001771 0.994529 0.001928 0.001771

MOTIF 4-ACGCGCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.930855 0.023691 0.023691 0.021764
 0.021764 0.932782 0.023691 0.021764
 0.021764 0.023691 0.932782 0.021764
 0.021764 0.932782 0.023691 0.021764
 0.021764 0.023691 0.932782 0.021764
 0.021764 0.932782 0.023691 0.021764
 0.021764 0.023691 0.023691 0.930855
 0.021764 0.023691 0.932782 0.021764

MOTIF 5-TAACCAYT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004811 0.005237 0.005237 0.984714
 0.984714 0.005237 0.005237 0.004811
 0.984714 0.005237 0.005237 0.004811
 0.004811 0.985140 0.005237 0.004811
 0.004811 0.985140 0.005237 0.004811
 0.845407 0.005237 0.005237 0.144118
 0.004811 0.567220 0.005237 0.422731
 0.004811 0.144544 0.005237 0.845407

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-6.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-6/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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