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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.233 G 0.233 T 0.268 

MOTIF 1-AGGTTTAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 76 P= 6.9e-002
 0.939748 0.000651 0.000651 0.058951
 0.117781 0.047483 0.756196 0.078539
 0.076919 0.000651 0.863417 0.059013
 0.000749 0.000651 0.079011 0.919590
 0.125560 0.000651 0.059040 0.814748
 0.000749 0.028083 0.020051 0.951117
 0.931716 0.000651 0.000651 0.066982
 0.052925 0.020051 0.848672 0.078352

MOTIF 2-GMYTARKC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 168 P= 7.0e-002
 0.027328 0.019421 0.944819 0.008432
 0.339490 0.466642 0.008353 0.185515
 0.170033 0.278867 0.099928 0.451171
 0.011672 0.055664 0.024009 0.908655
 0.908655 0.024009 0.055664 0.011672
 0.451171 0.099928 0.278867 0.170033
 0.185515 0.008353 0.466642 0.339490
 0.008432 0.944819 0.019421 0.027328

MOTIF 3-AGCCTCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 3.0e-001
 0.988729 0.003578 0.003578 0.004116
 0.004116 0.003578 0.667188 0.325119
 0.110773 0.881533 0.003578 0.004116
 0.004116 0.988190 0.003578 0.004116
 0.004116 0.003578 0.003578 0.988729
 0.004116 0.988190 0.003578 0.004116
 0.988729 0.003578 0.003578 0.004116
 0.004116 0.003578 0.988190 0.004116

MOTIF 4-GCCMAAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 7.0e-001
 0.000857 0.000745 0.997542 0.000857
 0.000857 0.930866 0.000745 0.067533
 0.045296 0.930901 0.022946 0.000857
 0.364034 0.492840 0.142269 0.000857
 0.908776 0.089622 0.000745 0.000857
 0.931049 0.067349 0.000745 0.000857
 0.134137 0.000745 0.788466 0.076652
 0.000857 0.868117 0.000745 0.130282

MOTIF 5-TAAAAGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.024318 0.021136 0.021136 0.933409
 0.933409 0.021136 0.021136 0.024318
 0.933409 0.021136 0.021136 0.024318
 0.933409 0.021136 0.021136 0.024318
 0.933409 0.021136 0.021136 0.024318
 0.024318 0.021136 0.930227 0.024318
 0.933409 0.021136 0.021136 0.024318
 0.024318 0.021136 0.930227 0.024318

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-36.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-36/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.73 seconds
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