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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-AATTTGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 84 P= 9.0e-003
 0.899773 0.000376 0.023882 0.075969
 0.928221 0.000376 0.047388 0.024015
 0.000472 0.252661 0.057018 0.689850
 0.126905 0.229256 0.000376 0.643463
 0.071122 0.165411 0.096761 0.666706
 0.035768 0.000376 0.963384 0.000472
 0.883136 0.000376 0.047388 0.069100
 0.094666 0.100542 0.113531 0.691261

MOTIF 2-CGTCTCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.003950 0.988950 0.003149 0.003950
 0.003950 0.003149 0.988950 0.003950
 0.003950 0.101571 0.101571 0.792908
 0.003950 0.988950 0.003149 0.003950
 0.003950 0.003149 0.003149 0.989751
 0.003950 0.890529 0.101571 0.003950
 0.201110 0.200309 0.003149 0.595432
 0.003950 0.988950 0.003149 0.003950

MOTIF 3-AGATGACW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.808146 0.048205 0.048205 0.095445
 0.001875 0.048205 0.948046 0.001875
 0.929090 0.001495 0.020831 0.048585
 0.021211 0.094915 0.020831 0.863043
 0.001875 0.001495 0.948046 0.048585
 0.855006 0.048205 0.094915 0.001875
 0.001875 0.807615 0.095065 0.095445
 0.621156 0.048205 0.001495 0.329145

MOTIF 4-AAAWAGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.993576 0.001974 0.001974 0.002476
 0.931889 0.001974 0.001974 0.064164
 0.746229 0.001974 0.001974 0.249823
 0.622655 0.001974 0.001974 0.373397
 0.683942 0.311608 0.001974 0.002476
 0.002476 0.001974 0.993074 0.002476
 0.993576 0.001974 0.001974 0.002476
 0.993576 0.001974 0.001974 0.002476

MOTIF 5-AGGAAGGW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.660664 0.112699 0.003494 0.223143
 0.004383 0.003494 0.987740 0.004383
 0.004383 0.003494 0.987740 0.004383
 0.879424 0.003494 0.112699 0.004383
 0.879424 0.003494 0.112699 0.004383
 0.004383 0.003494 0.987740 0.004383
 0.004383 0.003494 0.987740 0.004383
 0.333052 0.003494 0.003494 0.659959

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-34.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-34/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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