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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-AACTGAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.926926 0.068313 0.002324 0.002436
 0.596767 0.134303 0.134515 0.134415
 0.002436 0.992804 0.002324 0.002436
 0.002436 0.068313 0.002324 0.926926
 0.200617 0.068313 0.728633 0.002436
 0.992916 0.002324 0.002324 0.002436
 0.992916 0.002324 0.002324 0.002436
 0.134628 0.002324 0.134303 0.728746

MOTIF 2-CAAATATT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.005159 0.984760 0.004922 0.005159
 0.845021 0.004922 0.004922 0.145136
 0.984997 0.004922 0.004922 0.005159
 0.705044 0.004922 0.284875 0.005159
 0.005159 0.004922 0.004922 0.984997
 0.984997 0.004922 0.004922 0.005159
 0.005159 0.284875 0.004922 0.705044
 0.005159 0.004922 0.004922 0.984997

MOTIF 3-ACGCAGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.794715 0.068301 0.102185 0.034799
 0.068358 0.922802 0.007601 0.001239
 0.007658 0.034741 0.922802 0.034799
 0.135802 0.780765 0.048634 0.034799
 0.795040 0.135420 0.068301 0.001239
 0.048691 0.034741 0.814650 0.101918
 0.767255 0.135420 0.048634 0.048691
 0.034799 0.135745 0.794658 0.034799

MOTIF 4-AAGTGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 9.5e-001
 0.793484 0.050557 0.056481 0.099478
 0.848088 0.001720 0.050557 0.099635
 0.099635 0.001720 0.896842 0.001803
 0.011144 0.148389 0.050557 0.789910
 0.099478 0.001720 0.848162 0.050640
 0.848245 0.099394 0.050557 0.001803
 0.001803 0.001720 0.848005 0.148472
 0.994757 0.001720 0.001720 0.001803

MOTIF 5-GCGCCAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.091787 0.046575 0.859977 0.001661
 0.001661 0.950103 0.046575 0.001661
 0.001661 0.046575 0.950103 0.001661
 0.001661 0.814259 0.001584 0.182496
 0.046870 0.769778 0.046575 0.136778
 0.995170 0.001584 0.001584 0.001661
 0.046652 0.001584 0.950103 0.001661
 0.001661 0.904968 0.001584 0.091787

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-32.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-32/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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