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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.267 C 0.233 G 0.233 T 0.267 

MOTIF 1-CTGCTCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.078878 0.915643 0.002549 0.002930
 0.002930 0.078497 0.002549 0.916025
 0.002930 0.002549 0.991592 0.002930
 0.002930 0.915643 0.078497 0.002930
 0.078878 0.002549 0.002549 0.916025
 0.002930 0.991592 0.002549 0.002930
 0.002930 0.915643 0.002549 0.078878
 0.078878 0.687555 0.078497 0.155071

MOTIF 2-AATTGAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 6.7e-001
 0.854938 0.028578 0.115722 0.000762
 0.821863 0.109312 0.068064 0.000762
 0.147549 0.206391 0.109439 0.536621
 0.000762 0.000663 0.000663 0.997913
 0.079797 0.000663 0.918779 0.000762
 0.713055 0.158796 0.028578 0.099571
 0.744463 0.254113 0.000663 0.000762
 0.060054 0.246004 0.000663 0.693280

MOTIF 3-AAAAGAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 7.7e-001
 0.826720 0.055991 0.006180 0.111109
 0.925477 0.006180 0.028413 0.039930
 0.873301 0.055903 0.014667 0.056129
 0.666860 0.193707 0.083393 0.056041
 0.012440 0.067371 0.891638 0.028551
 0.777086 0.055903 0.110971 0.056041
 0.037536 0.000922 0.795187 0.166355
 0.877053 0.028413 0.027114 0.067421

MOTIF 4-ATTTTTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.859388 0.002237 0.135803 0.002572
 0.002572 0.002237 0.029839 0.965352
 0.002572 0.002237 0.029839 0.965352
 0.069248 0.002237 0.002237 0.926277
 0.069248 0.002237 0.002237 0.926277
 0.069248 0.002237 0.068913 0.859602
 0.069248 0.002237 0.925943 0.002572
 0.792712 0.002237 0.068913 0.136138

MOTIF 5-TGTTRAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003070 0.002671 0.002671 0.991588
 0.003070 0.002671 0.991189 0.003070
 0.274782 0.002671 0.002671 0.719877
 0.003070 0.194794 0.002671 0.799465
 0.354626 0.002671 0.639633 0.003070
 0.912000 0.002671 0.002671 0.082659
 0.991588 0.002671 0.002671 0.003070
 0.593391 0.082259 0.241691 0.082659

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-31.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-31/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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