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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-GTCMGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.5e-002
 0.001273 0.001145 0.996309 0.001273
 0.001273 0.135897 0.001145 0.861684
 0.169908 0.827674 0.001145 0.001273
 0.384690 0.579367 0.001145 0.034799
 0.001273 0.001145 0.996309 0.001273
 0.001273 0.929258 0.034671 0.034799
 0.929385 0.034671 0.034671 0.001273
 0.949032 0.001145 0.015024 0.034799

MOTIF 2-AGACGCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.933018 0.021527 0.021527 0.023927
 0.023927 0.021527 0.930618 0.023927
 0.933018 0.021527 0.021527 0.023927
 0.023927 0.930618 0.021527 0.023927
 0.023927 0.021527 0.930618 0.023927
 0.023927 0.930618 0.021527 0.023927
 0.933018 0.021527 0.021527 0.023927
 0.023927 0.021527 0.930618 0.023927

MOTIF 3-GGTGTACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.002884 0.002595 0.991638 0.002884
 0.078832 0.002595 0.839741 0.078832
 0.002884 0.002595 0.002595 0.991927
 0.078832 0.002595 0.915689 0.002884
 0.002884 0.002595 0.002595 0.991927
 0.991927 0.002595 0.002595 0.002884
 0.078832 0.687109 0.002595 0.231464
 0.231464 0.154736 0.610917 0.002884

MOTIF 4-TGWCGWCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.001980 0.210489 0.001782 0.785749
 0.001980 0.001782 0.863784 0.132454
 0.472140 0.158333 0.080099 0.289427
 0.001980 0.994257 0.001782 0.001980
 0.001980 0.001782 0.994257 0.001980
 0.289427 0.080099 0.158333 0.472140
 0.132454 0.863784 0.001782 0.001980
 0.785749 0.001782 0.210489 0.001980

MOTIF 5-AAATCGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.915958 0.078562 0.002595 0.002885
 0.915958 0.002595 0.078562 0.002885
 0.535143 0.154774 0.078562 0.231521
 0.002885 0.002595 0.002595 0.991925
 0.002885 0.915668 0.078562 0.002885
 0.002885 0.002595 0.991636 0.002885
 0.991925 0.002595 0.002595 0.002885
 0.839746 0.002595 0.154774 0.002885

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-30.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-30/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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