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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.372 C 0.128 G 0.128 T 0.372 

MOTIF 1-AATCRATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 201 P= 1.3e-006
 0.982689 0.007881 0.009016 0.000414
 0.965150 0.007869 0.015644 0.011338
 0.011338 0.017239 0.000143 0.971280
 0.000414 0.999028 0.000143 0.000414
 0.590098 0.007869 0.382920 0.019113
 0.972850 0.007869 0.003341 0.015940
 0.000415 0.011067 0.000226 0.988292
 0.984178 0.003758 0.007869 0.004195

MOTIF 2-TTGGAAWA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.150856 0.001609 0.001609 0.845926
 0.040643 0.001609 0.001609 0.956139
 0.004661 0.001609 0.989069 0.004661
 0.004661 0.001609 0.989069 0.004661
 0.992121 0.001609 0.001609 0.004661
 0.992121 0.001609 0.001609 0.004661
 0.555835 0.001609 0.088529 0.354027
 0.992121 0.001609 0.001609 0.004661

MOTIF 3-GCGGAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.074587 0.072101 0.849515 0.003796
 0.033101 0.710591 0.214368 0.041939
 0.003796 0.001310 0.991097 0.003796
 0.003796 0.001310 0.991097 0.003796
 0.709734 0.001310 0.214368 0.074587
 0.993583 0.001310 0.001310 0.003796
 0.922792 0.072101 0.001310 0.003796
 0.922792 0.001310 0.001310 0.074587

MOTIF 4-WRAGAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.0e-001
 0.373689 0.000673 0.161681 0.463956
 0.585678 0.000673 0.411697 0.001951
 0.734469 0.000673 0.000673 0.264184
 0.001951 0.000673 0.995424 0.001951
 0.960318 0.000673 0.037057 0.001951
 0.850991 0.000673 0.146385 0.001951
 0.960318 0.000673 0.037057 0.001951
 0.741780 0.255595 0.000673 0.001951

MOTIF 5-TTCTGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 9.7e-001
 0.001621 0.242985 0.061117 0.694278
 0.001621 0.000560 0.000560 0.997260
 0.001621 0.996198 0.000560 0.001621
 0.001621 0.182231 0.000560 0.815588
 0.001621 0.182426 0.814332 0.001621
 0.573360 0.182231 0.091346 0.153063
 0.815881 0.121479 0.000560 0.062081
 0.997260 0.000560 0.000560 0.001621

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-28.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-28/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	0.90 seconds
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