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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.271 C 0.229 G 0.229 T 0.271 

MOTIF 1-CCACTTSA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 1.2e-001
 0.091691 0.708087 0.168972 0.031251
 0.091691 0.815818 0.000994 0.091497
 0.966762 0.000994 0.000994 0.031251
 0.001176 0.996655 0.000994 0.001176
 0.001176 0.031068 0.031068 0.936687
 0.001176 0.000994 0.000994 0.996837
 0.001176 0.346265 0.621309 0.031251
 0.924141 0.000994 0.073690 0.001176

MOTIF 2-AGCTCTTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.901146 0.002955 0.092402 0.003497
 0.003497 0.092402 0.900604 0.003497
 0.182678 0.810870 0.002955 0.003497
 0.092944 0.002955 0.002955 0.901146
 0.003497 0.990051 0.002955 0.003497
 0.003497 0.092402 0.002955 0.901146
 0.003497 0.002955 0.002955 0.990593
 0.003497 0.990051 0.002955 0.003497

MOTIF 3-ACAACAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.686874 0.001086 0.310755 0.001285
 0.245251 0.705889 0.001086 0.047773
 0.930787 0.001086 0.001086 0.067041
 0.733256 0.001086 0.264372 0.001285
 0.160407 0.573988 0.001086 0.264519
 0.930787 0.001086 0.066842 0.001285
 0.001285 0.001086 0.850832 0.146797
 0.165833 0.132597 0.700285 0.001285

MOTIF 4-GAGACGCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.003060 0.002586 0.991293 0.003060
 0.835211 0.002586 0.080864 0.081339
 0.003060 0.002586 0.991293 0.003060
 0.913489 0.080864 0.002586 0.003060
 0.081339 0.913015 0.002586 0.003060
 0.035465 0.002586 0.880610 0.081339
 0.159617 0.678180 0.080864 0.081339
 0.254607 0.002586 0.002586 0.740221

MOTIF 5-GAGCACCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.8e-001
 0.093214 0.002964 0.900315 0.003507
 0.900859 0.092670 0.002964 0.003507
 0.003507 0.002964 0.900315 0.093214
 0.003507 0.810609 0.092670 0.093214
 0.900859 0.092670 0.002964 0.003507
 0.003507 0.990022 0.002964 0.003507
 0.093214 0.720903 0.092670 0.093214
 0.003507 0.990022 0.002964 0.003507

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-27.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-27/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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