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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-AACGCGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.977066 0.002724 0.017399 0.002810
 0.991741 0.002724 0.002724 0.002810
 0.002810 0.684262 0.156421 0.156507
 0.002810 0.002724 0.991655 0.002810
 0.079535 0.914930 0.002724 0.002810
 0.002810 0.002724 0.914930 0.079535
 0.002810 0.684014 0.079449 0.233727
 0.002810 0.914930 0.002724 0.079535

MOTIF 2-ACCACTMG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 2.4e-001
 0.994326 0.001872 0.001872 0.001931
 0.054647 0.730687 0.054588 0.160079
 0.001931 0.994266 0.001872 0.001931
 0.747343 0.054588 0.107473 0.090596
 0.054647 0.941550 0.001872 0.001931
 0.001931 0.001872 0.001872 0.994326
 0.408599 0.587598 0.001872 0.001931
 0.001931 0.001872 0.676263 0.319934

MOTIF 3-GTTGAACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.281006 0.003275 0.712340 0.003379
 0.003379 0.003275 0.003275 0.990071
 0.003379 0.158426 0.003275 0.834920
 0.003379 0.095520 0.805477 0.095624
 0.990071 0.003275 0.003275 0.003379
 0.990071 0.003275 0.003275 0.003379
 0.003379 0.989967 0.003275 0.003379
 0.095624 0.805329 0.003275 0.095772

MOTIF 4-CCGMCTGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002133 0.935424 0.002068 0.060374
 0.002133 0.935424 0.060309 0.002133
 0.235472 0.002068 0.760327 0.002133
 0.352330 0.585228 0.060309 0.002133
 0.060374 0.877184 0.002068 0.060374
 0.118615 0.002068 0.002068 0.877249
 0.002133 0.002068 0.993665 0.002133
 0.002133 0.993665 0.002068 0.002133

MOTIF 5-CTCTACCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.050831 0.896597 0.001741 0.050831
 0.011175 0.001741 0.099968 0.887116
 0.001796 0.994667 0.001741 0.001796
 0.050831 0.001741 0.001741 0.945687
 0.798109 0.149319 0.050776 0.001796
 0.001796 0.945632 0.001741 0.050831
 0.001796 0.945632 0.050776 0.001796
 0.748916 0.149319 0.099968 0.001796

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-24.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-24/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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