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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-AGACGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.931427 0.023118 0.023118 0.022336
 0.022336 0.023118 0.932209 0.022336
 0.931427 0.023118 0.023118 0.022336
 0.022336 0.932209 0.023118 0.022336
 0.022336 0.023118 0.932209 0.022336
 0.022336 0.932209 0.023118 0.022336
 0.931427 0.023118 0.023118 0.022336
 0.022336 0.023118 0.932209 0.022336

MOTIF 2-CAAGTGGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.026204 0.735989 0.118940 0.118868
 0.809769 0.002139 0.127719 0.060373
 0.935348 0.060446 0.002139 0.002067
 0.002067 0.002139 0.993727 0.002067
 0.002067 0.002139 0.002139 0.993655
 0.002067 0.002139 0.935421 0.060373
 0.002067 0.060446 0.935421 0.002067
 0.118868 0.143581 0.002139 0.735412

MOTIF 3-GGAACACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 7.6e-001
 0.003492 0.003614 0.989402 0.003492
 0.102007 0.200962 0.693539 0.003492
 0.989279 0.003614 0.003614 0.003492
 0.890764 0.102130 0.003614 0.003492
 0.102007 0.890886 0.003614 0.003492
 0.989279 0.003614 0.003614 0.003492
 0.102007 0.792371 0.102130 0.003492
 0.102007 0.003614 0.890886 0.003492

MOTIF 4-ACCCATTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.884110 0.003834 0.003834 0.108221
 0.003705 0.945490 0.003834 0.046971
 0.003705 0.884240 0.108351 0.003705
 0.003705 0.988756 0.003834 0.003705
 0.779594 0.108351 0.003834 0.108221
 0.003705 0.003834 0.003834 0.988626
 0.108221 0.003834 0.003834 0.884110
 0.003705 0.884240 0.108351 0.003705

MOTIF 5-AGCCCTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.931427 0.023118 0.023118 0.022336
 0.022336 0.023118 0.932209 0.022336
 0.022336 0.932209 0.023118 0.022336
 0.022336 0.932209 0.023118 0.022336
 0.022336 0.932209 0.023118 0.022336
 0.022336 0.023118 0.023118 0.931427
 0.022336 0.932209 0.023118 0.022336
 0.931427 0.023118 0.023118 0.022336

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-22.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-22/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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