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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-AAATKCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 3.0e-001
 0.995440 0.001481 0.001481 0.001598
 0.995440 0.001481 0.001481 0.001598
 0.789351 0.001481 0.036823 0.172345
 0.300748 0.044168 0.001481 0.653603
 0.086972 0.001481 0.386626 0.524921
 0.319041 0.677880 0.001481 0.001598
 0.935013 0.001481 0.061907 0.001598
 0.995440 0.001481 0.001481 0.001598

MOTIF 2-ATCADRTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.865818 0.001499 0.131066 0.001617
 0.001617 0.001499 0.001499 0.995386
 0.001617 0.995268 0.001499 0.001617
 0.606683 0.217445 0.174255 0.001617
 0.347270 0.001499 0.433530 0.217702
 0.347270 0.001499 0.649615 0.001617
 0.001617 0.001499 0.001499 0.995386
 0.087995 0.087877 0.001499 0.822629

MOTIF 3-CTSAAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.143949 0.850955 0.002451 0.002645
 0.002645 0.002451 0.002451 0.992452
 0.002645 0.568120 0.426590 0.002645
 0.992452 0.002451 0.002451 0.002645
 0.921800 0.002451 0.002451 0.073297
 0.002645 0.002451 0.992258 0.002645
 0.709618 0.002451 0.285286 0.002645
 0.639193 0.143755 0.002451 0.214600

MOTIF 4-GGCGAGAK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.005238 0.004854 0.984670 0.005238
 0.005238 0.004854 0.984670 0.005238
 0.145147 0.704851 0.144764 0.005238
 0.005238 0.004854 0.984670 0.005238
 0.985053 0.004854 0.004854 0.005238
 0.005238 0.004854 0.984670 0.005238
 0.845144 0.144764 0.004854 0.005238
 0.145147 0.004854 0.285123 0.564875

MOTIF 5-GYCAGTCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.151849 0.003630 0.840605 0.003917
 0.108539 0.526739 0.003630 0.361092
 0.003917 0.883914 0.003630 0.108539
 0.779579 0.108252 0.108252 0.003917
 0.003917 0.003630 0.988536 0.003917
 0.003917 0.108252 0.108252 0.779579
 0.108539 0.883914 0.003630 0.003917
 0.108539 0.003630 0.883914 0.003917

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-19.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-19/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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