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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-GAAAAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001801 0.001559 0.901538 0.095103
 0.901780 0.094861 0.001559 0.001801
 0.986173 0.001559 0.001559 0.010709
 0.901780 0.001559 0.001559 0.095103
 0.823441 0.079897 0.001559 0.095103
 0.742018 0.188766 0.020840 0.048377
 0.001801 0.001559 0.948263 0.048377
 0.995081 0.001559 0.001559 0.001801

MOTIF 2-CCTCCTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.0e-001
 0.016924 0.901064 0.080567 0.001446
 0.016924 0.980379 0.001251 0.001446
 0.001446 0.225832 0.001251 0.771471
 0.001446 0.771337 0.113482 0.113736
 0.076226 0.771517 0.113421 0.038836
 0.016924 0.001251 0.226013 0.755812
 0.001446 0.921077 0.076031 0.001446
 0.001446 0.920836 0.001251 0.076467

MOTIF 3-ACARYTGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.694589 0.112653 0.029484 0.163274
 0.002137 0.993876 0.001850 0.002137
 0.966530 0.001850 0.001850 0.029771
 0.401254 0.140197 0.456412 0.002137
 0.002137 0.456412 0.140197 0.401254
 0.029771 0.001850 0.001850 0.966530
 0.002137 0.001850 0.993876 0.002137
 0.163274 0.029484 0.112653 0.694589

MOTIF 4-ACACACTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.769816 0.112979 0.112979 0.004227
 0.004227 0.987887 0.003659 0.004227
 0.879136 0.003659 0.003659 0.113546
 0.113546 0.769248 0.003659 0.113546
 0.988455 0.003659 0.003659 0.004227
 0.004227 0.987887 0.003659 0.004227
 0.004227 0.003659 0.003659 0.988455
 0.113546 0.003659 0.222650 0.660145

MOTIF 5-GGGCTCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003809 0.003297 0.890569 0.102324
 0.201157 0.003297 0.791737 0.003809
 0.003809 0.101813 0.792054 0.102324
 0.102324 0.792054 0.101813 0.003809
 0.003809 0.101813 0.003297 0.891081
 0.003809 0.989085 0.003297 0.003809
 0.989596 0.003297 0.003297 0.003809
 0.792566 0.101813 0.101813 0.003809

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-18.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-18/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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