********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-CTRATTAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 2.1e-001
 0.050073 0.690628 0.055773 0.203527
 0.056101 0.000588 0.028180 0.915130
 0.603942 0.081782 0.313537 0.000739
 0.998085 0.000588 0.000588 0.000739
 0.000739 0.074167 0.000588 0.924506
 0.019134 0.136996 0.037378 0.806492
 0.685047 0.018983 0.295231 0.000739
 0.675284 0.120869 0.111076 0.092772

MOTIF 2-ACACARAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.994683 0.001633 0.001633 0.002051
 0.155263 0.841053 0.001633 0.002051
 0.637026 0.001633 0.257150 0.104192
 0.002051 0.994265 0.001633 0.002051
 0.994683 0.001633 0.001633 0.002051
 0.257732 0.001633 0.512996 0.227639
 0.994683 0.001633 0.001633 0.002051
 0.002051 0.666372 0.001633 0.329944

MOTIF 3-AGAAAATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.0e-001
 0.795620 0.101430 0.100945 0.002005
 0.002005 0.001596 0.994394 0.002005
 0.994803 0.001596 0.001596 0.002005
 0.994803 0.001596 0.001596 0.002005
 0.994803 0.001596 0.001596 0.002005
 0.695139 0.251343 0.051513 0.002005
 0.201349 0.051513 0.135471 0.611667
 0.152240 0.001596 0.844160 0.002005

MOTIF 4-CGSAGCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 8.3e-001
 0.257282 0.705728 0.001103 0.035886
 0.070498 0.015385 0.912732 0.001386
 0.070387 0.257000 0.464114 0.208500
 0.892907 0.104605 0.001103 0.001386
 0.001386 0.001103 0.961625 0.035886
 0.001386 0.754622 0.070104 0.173888
 0.809513 0.035604 0.104716 0.050168
 0.685793 0.104605 0.035604 0.173999

MOTIF 5-GAAACGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.044099 0.001355 0.952843 0.001703
 0.953190 0.043751 0.001355 0.001703
 0.893107 0.001355 0.018906 0.086631
 0.953190 0.001355 0.001355 0.044099
 0.024546 0.673766 0.128954 0.172734
 0.044099 0.001355 0.892896 0.061649
 0.868262 0.086284 0.001355 0.044099
 0.808042 0.061302 0.128954 0.001703

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-14.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-14/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.35 seconds
********************************************************************************